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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Other diseases
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Subclass
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Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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850 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
COQ7
ENSSSCG00000034655
ENSG00000167186
Coenzyme Q7, hydroxylase
Low tissue specificity
Detected in all
COQ8A
ENSSSCG00000010861
ENSG00000163050
Coenzyme Q8A
Tissue enhanced
Detected in all
heart:
66.9
male glands:
57.2
skeletal muscle:
138.1
COQ9
ENSSSCG00000025284
ENSG00000088682
Coenzyme Q9
Tissue enhanced
Detected in all
heart:
71.7
skeletal muscle:
80.6
COX1
ENSSSCG00000018075
ENSG00000198804
Cytochrome c oxidase subunit 1
Tissue enhanced
Detected in all
heart:
2782.5
COX3
ENSSSCG00000018082
ENSG00000198938
Cytochrome c oxidase subunit 3
Tissue enhanced
Detected in all
heart:
2427.5
COX6A1
ENSSSCG00000039265
ENSG00000111775
Cytochrome c oxidase subunit VIa polypeptide 1
Low tissue specificity
Detected in all
CP
ENSSSCG00000011700
ENSG00000047457
Ceruloplasmin precursor
Tissue enriched
Detected in many
liver:
192.8
CPA6
ENSSSCG00000006200
ENSG00000165078
Carboxypeptidase A6
Low tissue specificity
Detected in all
CPLX1
ENSSSCG00000037527
ENSG00000168993
Complexin 1
Tissue enhanced
Detected in some
brain:
72.4
kidney:
15.6
retina:
24.1
CPT1C
ENSSSCG00000024872
ENSG00000169169
Carnitine palmitoyltransferase 1C
Tissue enhanced
Detected in many
brain:
21.3
pineal gland:
14.5
CRAT
ENSSSCG00000005671
ENSG00000095321
Carnitine O-acetyltransferase
Tissue enhanced
Detected in all
skeletal muscle:
122.7
CRB1
ENSSSCG00000021897
ENSG00000134376
Crumbs 1, cell polarity complex component
Tissue enriched
Detected in some
retina:
41.3
CRX
ENSSSCG00000003124
ENSG00000105392
Cone-rod homeobox
Group enriched
Detected in some
pineal gland:
75.0
retina:
160.6
CRY1
ENSSSCG00000000164
ENSG00000008405
Cryptochrome circadian regulator 1
Tissue enhanced
Detected in all
cartilage:
44.8
CRYAB
ENSSSCG00000036724
ENSG00000109846
Alpha-crystallin B chain
Tissue enriched
Detected in many
lens:
2223.0
CRYBA1
ENSSSCG00000040641
ENSG00000108255
Crystallin beta A1
Tissue enriched
Detected in single
lens:
2538.5
CRYBA2
ENSSSCG00000040776
ENSG00000163499
Crystallin beta A2
Tissue enriched
Detected in single
lens:
694.3
CRYBB1
ENSSSCG00000009964
ENSG00000100122
Beta-crystallin B1
Tissue enriched
Detected in single
lens:
1037.4
CRYBB2
ENSSSCG00000009955
ENSG00000244752
Crystallin beta B2
Tissue enriched
Detected in single
lens:
2196.1
CRYBB3
ENSSSCG00000009954
ENSG00000100053
Crystallin beta B3
Tissue enriched
Detected in single
lens:
1634.4
CRYGB
ENSSSCG00000039241
ENSG00000182187
Crystallin gamma B
Tissue enriched
Detected in single
lens:
2488.8
CRYGC
ENSSSCG00000039620
ENSG00000163254
Crystallin gamma C
Tissue enriched
Detected in single
lens:
868.5
CRYGD
ENSSSCG00000034967
ENSG00000118231
Crystallin gamma D
Tissue enriched
Detected in single
lens:
206.4
CRYGS
ENSSSCG00000040431
ENSG00000213139
Crystallin gamma S
Tissue enriched
Detected in single
lens:
824.8
CRYM
ENSSSCG00000007849
ENSG00000103316
Crystallin mu
Tissue enhanced
Detected in many
brain:
56.3
male glands:
91.5
pituitary gland:
88.5
CSF1R
ENSSSCG00000014441
ENSG00000182578
Colony stimulating factor 1 receptor
Tissue enhanced
Detected in many
lymphoid tissue:
74.4
synovial tissue:
55.6
CSNK1D
ENSSSCG00000035852
ENSG00000141551
Casein kinase 1 delta
Low tissue specificity
Detected in all
CST3
ENSSSCG00000037360
ENSG00000101439
Cystatin-C precursor
Low tissue specificity
Detected in all
CSTB
ENSSSCG00000027357
ENSG00000160213
Cystatin-B
Tissue enhanced
Detected in all
mouth:
162.4
CTC1
ENSSSCG00000026818
ENSG00000178971
CST telomere replication complex component 1
Low tissue specificity
Detected in all
CTLA4
ENSSSCG00000016122
ENSG00000163599
Cytotoxic T-lymphocyte protein 4 precursor
Tissue enhanced
Detected in some
large intestine:
8.5
lymphoid tissue:
20.8
stomach:
6.7
CTNNA1
ENSSSCG00000014339
ENSG00000044115
Catenin alpha 1
Low tissue specificity
Detected in all
CWF19L1
ENSSSCG00000010550
ENSG00000095485
CWF19 like 1, cell cycle control (S. pombe)
Low tissue specificity
Detected in all
CX3CR1
ENSSSCG00000024024
ENSG00000168329
C-X3-C motif chemokine receptor 1
Group enriched
Detected in many
brain:
43.4
pineal gland:
12.1
CYP2U1
ENSSSCG00000009151
ENSG00000155016
Cytochrome P450 family 2 subfamily U member 1
Low tissue specificity
Detected in all
CYP4V2
ENSSSCG00000032687
ENSG00000145476
Cytochrome P450 family 4 subfamily V member 2
Tissue enhanced
Detected in all
liver:
38.0
CYP7B1
ENSSSCG00000022092
ENSG00000172817
Cytochrome P450 family 7 subfamily B member 1
Tissue enhanced
Detected in all
liver:
68.1
CYTB
ENSSSCG00000018094
ENSG00000198727
Cytochrome b (mitochondrion)
Tissue enhanced
Detected in all
heart:
1273.8
DAB1
ENSSSCG00000003833
ENSG00000173406
Disabled homolog 1
Tissue enhanced
Detected in many
brain:
21.4
liver:
21.0
vagus nerve:
14.3
DARS2
ENSSSCG00000015492
ENSG00000117593
Aspartyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
DBH
ENSSSCG00000005742
ENSG00000123454
Dopamine beta-hydroxylase
Tissue enriched
Detected in some
adrenal gland:
96.9
DCC
ENSSSCG00000040836
ENSG00000187323
DCC netrin 1 receptor
Tissue enhanced
Detected in some
brain:
20.5
epididymis:
22.8
male glands:
8.5
DCDC2
ENSSSCG00000001085
ENSG00000146038
Doublecortin domain containing 2
Tissue enhanced
Detected in many
choroid plexus:
29.7
fallopian tube:
33.3
kidney:
30.9
DCN
ENSSSCG00000000915
ENSG00000011465
Decorin precursor
Group enriched
Detected in many
cartilage:
321.1
cornea:
591.4
DCTN1
ENSSSCG00000008274
ENSG00000204843
Dynactin subunit 1
Low tissue specificity
Detected in all
DDC
ENSSSCG00000022009
ENSG00000132437
Dopa decarboxylase
Group enriched
Detected in some
brain:
23.8
kidney:
83.0
pineal gland:
80.8
DDHD1
ENSSSCG00000005043
ENSG00000100523
DDHD domain containing 1
Tissue enhanced
Detected in all
male glands:
62.1
DDHD2
ENSSSCG00000015818
ENSG00000085788
DDHD domain containing 2
Tissue enhanced
Detected in all
brain:
52.4
DENND5A
ENSSSCG00000014578
ENSG00000184014
DENN domain containing 5A
Low tissue specificity
Detected in all
DHDDS
ENSSSCG00000033516
ENSG00000117682
Dehydrodolichyl diphosphate synthase complex subunit DHDDS
Tissue enhanced
Detected in all
large intestine:
44.1
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