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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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850 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
POU4F3
ENSSSCG00000014412
ENSG00000091010
POU class 4 homeobox 3
Tissue enhanced
Detected in some
brain:
1.8
mouth:
2.1
retina:
8.0
PPIP5K2
ENSSSCG00000024999
ENSG00000145725
Diphosphoinositol pentakisphosphate kinase 2
Tissue enhanced
Detected in all
lens:
64.2
PPP2R2B
ENSSSCG00000028976
ENSG00000156475
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
Tissue enhanced
Detected in many
brain:
38.4
cornea:
32.3
lens:
62.1
retina:
33.4
PRCD
ENSSSCG00000028604
ENSG00000214140
Photoreceptor disc component
Tissue enriched
Detected in many
retina:
128.9
PRDM12
ENSSSCG00000005703
ENSG00000130711
PR/SET domain 12
Tissue enriched
Detected in single
brain:
13.3
PRDM8
ENSSSCG00000036555
ENSG00000152784
PR/SET domain 8
Low tissue specificity
Detected in many
PREPL
ENSSSCG00000008448
ENSG00000138078
Prolyl endopeptidase like
Tissue enhanced
Detected in all
brain:
49.8
pineal gland:
44.1
pituitary gland:
33.0
PRICKLE1
ENSSSCG00000034491
ENSG00000139174
Prickle planar cell polarity protein 1
Tissue enhanced
Detected in all
lens:
43.2
PRICKLE2
ENSSSCG00000011495
ENSG00000163637
Prickle planar cell polarity protein 2
Tissue enhanced
Detected in many
brain:
33.8
PRIMPOL
ENSSSCG00000015786
ENSG00000164306
Primase and DNA directed polymerase
Low tissue specificity
Detected in all
PRKCG
ENSSSCG00000003256
ENSG00000126583
Protein kinase C gamma
Tissue enriched
Detected in some
brain:
56.1
PRKN
ENSSSCG00000004032
ENSG00000185345
E3 ubiquitin-protein ligase parkin
Low tissue specificity
Detected in all
PRKRA
ENSSSCG00000038254
ENSG00000180228
Protein activator of interferon induced protein kinase EIF2AK2
Low tissue specificity
Detected in all
PRNP
ENSSSCG00000007039
ENSG00000171867
Prion protein
Low tissue specificity
Detected in all
PROM1
ENSSSCG00000008745
ENSG00000007062
Prominin 1
Group enriched
Detected in many
male glands:
120.2
retina:
46.7
upper respiratory system:
41.6
PRPF3
ENSSSCG00000030119
ENSG00000117360
U4/U6 small nuclear ribonucleoprotein Prp3
Low tissue specificity
Detected in all
PRPF31
ENSSSCG00000003263
ENSG00000105618
Pre-mRNA processing factor 31
Low tissue specificity
Detected in all
PRPF4
ENSSSCG00000024648
ENSG00000136875
Pre-mRNA processing factor 4
Low tissue specificity
Detected in all
PRPF6
ENSSSCG00000029119
ENSG00000101161
Pre-mRNA processing factor 6
Low tissue specificity
Detected in all
PRPF8
ENSSSCG00000017817
ENSG00000174231
Pre-mRNA processing factor 8
Low tissue specificity
Detected in all
PRPH
ENSSSCG00000000195
ENSG00000135406
Peripherin
Tissue enriched
Detected in many
brain:
87.3
PRPH2
ENSSSCG00000031628
ENSG00000112619
Peripherin 2
Tissue enriched
Detected in some
retina:
201.7
PRX
ENSSSCG00000038439
ENSG00000105227
Periaxin
Group enriched
Detected in many
lens:
104.5
vagus nerve:
161.0
PSEN1
ENSSSCG00000002340
ENSG00000080815
Presenilin-1
Low tissue specificity
Detected in all
PSEN2
ENSSSCG00000010860
ENSG00000143801
Presenilin-2 Presenilin-2 NTF subunit Presenilin-2 CTF subunit
Tissue enhanced
Detected in all
liver:
64.7
PTPRQ
ENSSSCG00000031716
ENSG00000139304
Protein tyrosine phosphatase, receptor type Q
Tissue enhanced
Detected in some
choroid plexus:
37.4
kidney:
21.3
mesothelial tissue:
74.0
PUM1
ENSSSCG00000003591
ENSG00000134644
Pumilio RNA binding family member 1
Low tissue specificity
Detected in all
RAB7A
ENSSSCG00000011615
ENSG00000075785
RAB7A, member RAS oncogene family
Low tissue specificity
Detected in all
RAPGEF2
ENSSSCG00000008881
ENSG00000109756
Rap guanine nucleotide exchange factor 2
Low tissue specificity
Detected in all
RARS2
ENSSSCG00000004303
ENSG00000146282
Arginyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
RAX2
ENSSSCG00000032429
ENSG00000173976
Retina and anterior neural fold homeobox 2
Tissue enriched
Detected in many
retina:
77.4
RBP3
ENSSSCG00000010374
ENSG00000265203
Retinol binding protein 3
Tissue enriched
Detected in some
retina:
167.9
RD3
ENSSSCG00000035369
ENSG00000198570
Retinal degeneration 3
Tissue enriched
Detected in all
retina:
54.1
RDH12
ENSSSCG00000002297
ENSG00000139988
Retinol dehydrogenase 12 precursor
Tissue enriched
Detected in some
testis:
191.0
RDH5
ENSSSCG00000000362
ENSG00000135437
Retinol dehydrogenase 5
Tissue enhanced
Detected in many
adipose tissue:
26.7
aorta:
30.2
brain:
23.6
choroid plexus:
16.3
RDX
ENSSSCG00000015013
ENSG00000137710
Radixin
Low tissue specificity
Detected in all
REEP1
ENSSSCG00000023710
ENSG00000068615
Receptor accessory protein 1
Tissue enhanced
Detected in many
brain:
26.5
lens:
63.7
REEP2
ENSSSCG00000014335
ENSG00000132563
Receptor accessory protein 2
Tissue enhanced
Detected in all
lens:
152.3
testis:
49.9
RELN
ENSSSCG00000015426
ENSG00000189056
Reelin
Group enriched
Detected in many
brain:
60.5
vagus nerve:
49.0
REPS1
ENSSSCG00000004146
ENSG00000135597
RALBP1 associated Eps domain containing 1
Low tissue specificity
Detected in all
REST
ENSSSCG00000023357
ENSG00000084093
RE1 silencing transcription factor
Low tissue specificity
Detected in all
RET
ENSSSCG00000010199
ENSG00000165731
Ret proto-oncogene
Tissue enriched
Detected in many
brain:
52.4
RETREG1
ENSSSCG00000016792
ENSG00000154153
Reticulophagy regulator 1
Low tissue specificity
Detected in all
RFC1
ENSSSCG00000008788
ENSG00000035928
Replication factor C subunit 1
Low tissue specificity
Detected in all
RGR
ENSSSCG00000010350
ENSG00000148604
Retinal G protein coupled receptor
Tissue enriched
Detected in some
retina:
97.6
RGS9
ENSSSCG00000035402
ENSG00000108370
Regulator of G protein signaling 9
Group enriched
Detected in many
brain:
42.3
retina:
40.0
RGS9BP
ENSSSCG00000021479
ENSG00000186326
Regulator of G protein signaling 9 binding protein
Tissue enhanced
Detected in some
kidney:
13.3
retina:
48.1
RHO
ENSSSCG00000011590
ENSG00000163914
Rhodopsin
Tissue enriched
Detected in single
retina:
650.6
RIMS1
ENSSSCG00000004280
ENSG00000079841
Regulating synaptic membrane exocytosis 1
Tissue enhanced
Detected in many
brain:
171.7
lens:
92.5
RIPOR2
ENSSSCG00000001097
ENSG00000111913
RHO family interacting cell polarization regulator 2
Tissue enhanced
Detected in many
lymphoid tissue:
61.4
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