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UMAP gene cluster
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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
13
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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850 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RLBP1
ENSSSCG00000001836
ENSG00000140522
Retinaldehyde binding protein 1
Tissue enhanced
Detected in all
brain:
29.0
retina:
67.7
RNF170
ENSSSCG00000036001
ENSG00000120925
Ring finger protein 170
Low tissue specificity
Detected in all
RNF216
ENSSSCG00000021285
ENSG00000011275
Ring finger protein 216
Low tissue specificity
Detected in all
ROGDI
ENSSSCG00000007932
ENSG00000067836
Rogdi homolog
Tissue enhanced
Detected in all
stomach:
66.7
ROM1
ENSSSCG00000033054
ENSG00000149489
Retinal outer segment membrane protein 1
Group enriched
Detected in all
pineal gland:
16.6
retina:
57.3
RP2
ENSSSCG00000027701
ENSG00000102218
RP2, ARL3 GTPase activating protein
Tissue enriched
Detected in all
thyroid gland:
99.4
RP9
ENSSSCG00000038919
ENSG00000164610
RP9, pre-mRNA splicing factor
Low tissue specificity
Detected in all
RPE65
ENSSSCG00000003794
ENSG00000116745
RPE65, retinoid isomerohydrolase
Group enriched
Detected in some
brain:
15.5
pituitary gland:
15.7
retina:
32.9
RPGRIP1
ENSSSCG00000002129
ENSG00000092200
RPGR interacting protein 1
Group enriched
Detected in many
epididymis:
15.0
retina:
21.4
testis:
51.9
RRM2B
ENSSSCG00000036139
ENSG00000048392
Ribonucleotide reductase regulatory TP53 inducible subunit M2B
Low tissue specificity
Detected in all
RTN2
ENSSSCG00000036870
ENSG00000125744
Reticulon-2
Tissue enhanced
Detected in all
retina:
27.6
skeletal muscle:
79.7
RTN4IP1
ENSSSCG00000004373
ENSG00000130347
Reticulon 4 interacting protein 1
Low tissue specificity
Detected in all
RUBCN
ENSSSCG00000011853
ENSG00000145016
Run domain Beclin-1-interacting and cysteine-rich domain-containing protein
Low tissue specificity
Detected in all
S1PR2
ENSSSCG00000013658
ENSG00000267534
Sphingosine 1-phosphate receptor 2
Low tissue specificity
Detected in all
SACS
ENSSSCG00000035493
ENSG00000151835
Sacsin molecular chaperone
Tissue enhanced
Detected in all
brain:
25.8
SAG
ENSSSCG00000016301
ENSG00000130561
S-arrestin
Tissue enriched
Detected in some
retina:
341.4
SAMD12
ENSSSCG00000036553
ENSG00000177570
Sterile alpha motif domain containing 12
Tissue enhanced
Detected in many
brain:
27.0
SBF1
ENSSSCG00000000968
ENSG00000100241
Myotubularin-related protein 5
Low tissue specificity
Detected in all
SBF2
ENSSSCG00000013409
ENSG00000133812
SET binding factor 2
Low tissue specificity
Detected in all
SCARB2
ENSSSCG00000008980
ENSG00000138760
Lysosome membrane protein 2 precursor
Low tissue specificity
Detected in all
SCN11A
ENSSSCG00000029419
ENSG00000168356
Sodium voltage-gated channel alpha subunit 11
Tissue enriched
Detected in some
testis:
17.3
SCN1A
ENSSSCG00000024204
ENSG00000144285
Sodium voltage-gated channel alpha subunit 1
Tissue enriched
Detected in some
brain:
46.9
SCN1B
ENSSSCG00000023267
ENSG00000105711
Sodium voltage-gated channel beta subunit 1
Group enriched
Detected in many
brain:
99.0
skeletal muscle:
52.5
SCN2A
ENSSSCG00000015905
ENSG00000136531
Sodium voltage-gated channel alpha subunit 2
Tissue enriched
Detected in some
brain:
44.5
SCN3A
ENSSSCG00000015911
ENSG00000153253
Sodium voltage-gated channel alpha subunit 3
Group enriched
Detected in some
brain:
19.6
pineal gland:
22.3
pituitary gland:
21.3
SCN4A
ENSSSCG00000017282
ENSG00000007314
Sodium voltage-gated channel alpha subunit 4
Tissue enriched
Detected in some
skeletal muscle:
63.3
SCN8A
ENSSSCG00000000228
ENSG00000196876
Sodium voltage-gated channel alpha subunit 8
Group enriched
Detected in many
brain:
34.5
lens:
11.0
pineal gland:
11.7
retina:
16.6
SCN9A
ENSSSCG00000015913
ENSG00000169432
Sodium voltage-gated channel alpha subunit 9
Tissue enhanced
Detected in many
brain:
19.2
pituitary gland:
17.5
SELRC1
ENSSSCG00000027119
ENSG00000162377
Sel1 repeat containing 1
Low tissue specificity
Detected in all
SEMA4A
ENSSSCG00000006495
ENSG00000196189
Semaphorin 4A
Tissue enhanced
Detected in many
lymphoid tissue:
35.6
stomach:
34.4
SEPSECS
ENSSSCG00000025315
ENSG00000109618
Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
Tissue enhanced
Detected in all
liver:
29.5
SEPT9
ENSSSCG00000017168
ENSG00000184640
Septin 9
Low tissue specificity
Detected in all
SERPINB6
ENSSSCG00000038404
ENSG00000124570
Serpin family B member 6
Group enriched
Detected in all
lens:
176.6
male glands:
47.4
SERPINI1
ENSSSCG00000011740
ENSG00000163536
Serpin family I member 1
Tissue enhanced
Detected in many
brain:
26.2
pineal gland:
10.7
pituitary gland:
15.5
SETX
ENSSSCG00000005724
ENSG00000107290
Senataxin
Tissue enhanced
Detected in all
testis:
61.5
SGCE
ENSSSCG00000015328
ENSG00000127990
Epsilon-sarcoglycan
Low tissue specificity
Detected in all
SH3TC2
ENSSSCG00000023279
ENSG00000169247
SH3 domain and tetratricopeptide repeats 2
Tissue enhanced
Detected in many
brain:
24.0
vagus nerve:
47.3
SIGMAR1
ENSSSCG00000037000
ENSG00000147955
Sigma non-opioid intracellular receptor 1
Tissue enhanced
Detected in all
liver:
77.8
SIL1
ENSSSCG00000024189
ENSG00000120725
SIL1 nucleotide exchange factor
Low tissue specificity
Detected in all
SIPA1L3
ENSSSCG00000002950
ENSG00000105738
Signal induced proliferation associated 1 like 3
Tissue enhanced
Detected in all
male glands:
62.5
stomach:
62.3
SIX1
ENSSSCG00000005087
ENSG00000126778
Homeobox protein SIX1
Tissue enhanced
Detected in many
pituitary gland:
39.5
salivary gland:
31.6
skeletal muscle:
47.3
SLA-DQB1
ENSSSCG00000001457
ENSG00000179344,ENSG00000232629
SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
129.0
SLC12A5
ENSSSCG00000007437
ENSG00000124140
Solute carrier family 12 member 5
Group enriched
Detected in some
brain:
42.1
pineal gland:
24.2
retina:
32.8
SLC12A6
ENSSSCG00000002243
ENSG00000140199
Solute carrier family 12 member 6
Low tissue specificity
Detected in all
SLC13A5
ENSSSCG00000017888
ENSG00000141485
Solute carrier family 13 member 5
Tissue enhanced
Detected in many
endometrium:
33.3
liver:
24.3
SLC16A12
ENSSSCG00000010455
ENSG00000152779
Solute carrier family 16 member 12
Tissue enhanced
Detected in all
kidney:
52.5
liver:
34.1
SLC17A8
ENSSSCG00000038946
ENSG00000179520
Solute carrier family 17 member 8
Tissue enhanced
Detected in some
brain:
9.6
liver:
6.6
retina:
6.0
SLC18A3
ENSSSCG00000022274
ENSG00000187714
Solute carrier family 18 member A3
Tissue enriched
Detected in some
brain:
56.8
SLC19A2
ENSSSCG00000006290
ENSG00000117479
Thiamine transporter 1
Low tissue specificity
Detected in all
SLC1A2
ENSSSCG00000013296
ENSG00000110436
Solute carrier family 1 member 2
Tissue enriched
Detected in some
brain:
89.6
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