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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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850 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PARK7
ENSSSCG00000003385
ENSG00000116288
Protein DJ-1
Tissue enriched
Detected in all
lens:
158.3
PAX6
ENSSSCG00000013320
ENSG00000007372
Paired box protein Pax-6 isoform 1
Tissue enhanced
Detected in some
cornea:
121.0
lens:
48.8
retina:
31.4
PCDH15
ENSSSCG00000010426
ENSG00000150275
Protocadherin related 15
Tissue enhanced
Detected in some
lens:
24.5
ovary:
13.8
retina:
67.0
PCDH19
ENSSSCG00000012479
ENSG00000165194
Protocadherin 19
Tissue enhanced
Detected in many
lens:
38.0
PCNA
ENSSSCG00000030642
ENSG00000132646
Proliferating cell nuclear antigen
Tissue enhanced
Detected in all
lymphoid tissue:
46.8
PDCD1
ENSSSCG00000037319
ENSG00000188389
Programmed cell death protein 1 precursor
Tissue enhanced
Detected in some
large intestine:
11.0
lymphoid tissue:
14.8
thyroid gland:
7.5
PDE10A
ENSSSCG00000004027
ENSG00000112541
Phosphodiesterase 10A
Tissue enhanced
Detected in many
brain:
69.6
PDE6A
ENSSSCG00000014438
ENSG00000132915
Phosphodiesterase 6A
Tissue enriched
Detected in some
retina:
121.5
PDE6B
ENSSSCG00000036645
ENSG00000133256
Phosphodiesterase 6B
Tissue enriched
Detected in some
retina:
82.0
PDE6C
ENSSSCG00000010480
ENSG00000095464
Phosphodiesterase 6C
Group enriched
Detected in some
pineal gland:
36.3
retina:
46.5
PDE6G
ENSSSCG00000037638
ENSG00000185527
Phosphodiesterase 6G
Tissue enriched
Detected in some
retina:
389.8
PDE6H
ENSSSCG00000035399
ENSG00000139053
Retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma
Tissue enriched
Detected in some
retina:
129.4
PDGFB
ENSSSCG00000033327
ENSG00000100311
Platelet derived growth factor subunit B
Low tissue specificity
Detected in many
PDGFRB
ENSSSCG00000022741
ENSG00000113721
Platelet derived growth factor receptor beta
Low tissue specificity
Detected in many
PDK3
ENSSSCG00000012181
ENSG00000067992
Pyruvate dehydrogenase kinase 3
Low tissue specificity
Detected in all
PDSS1
ENSSSCG00000011061
ENSG00000148459
Decaprenyl diphosphate synthase subunit 1
Tissue enhanced
Detected in all
large intestine:
32.3
PDSS2
ENSSSCG00000036168
ENSG00000164494
Decaprenyl-diphosphate synthase subunit 2
Low tissue specificity
Detected in all
PDYN
ENSSSCG00000037684
ENSG00000101327
Proenkephalin-B preproprotein
Group enriched
Detected in some
brain:
49.1
cornea:
60.7
PER2
ENSSSCG00000016338
ENSG00000132326
Period circadian regulator 2
Low tissue specificity
Detected in all
PER3
ENSSSCG00000028572
ENSG00000049246
Period circadian regulator 3
Low tissue specificity
Detected in all
PEX7
ENSSSCG00000004160
ENSG00000112357
Peroxisomal biogenesis factor 7
Low tissue specificity
Detected in all
PHOX2A
ENSSSCG00000014813
ENSG00000165462
Paired like homeobox 2a
Tissue enriched
Detected in some
adrenal gland:
56.4
PHOX2B
ENSSSCG00000038488
ENSG00000109132
Paired like homeobox 2b
Tissue enhanced
Detected in some
adrenal gland:
25.0
small intestine:
6.3
smooth muscle:
5.2
PHYH
ENSSSCG00000039244
ENSG00000107537
Phytanoyl-CoA dioxygenase, peroxisomal
Tissue enhanced
Detected in all
liver:
56.3
PIGP
ENSSSCG00000012061
ENSG00000185808
Phosphatidylinositol N-acetylglucosaminyltransferase subunit P
Tissue enhanced
Detected in all
choroid plexus:
51.7
lens:
99.5
PIK3R5
ENSSSCG00000017991
ENSG00000141506
Phosphoinositide 3-kinase regulatory subunit 5
Tissue enhanced
Detected in many
lymphoid tissue:
43.2
stomach:
27.3
PIKFYVE
ENSSSCG00000016147
ENSG00000115020
Phosphoinositide kinase, FYVE-type zinc finger containing
Low tissue specificity
Detected in all
PINK1
ENSSSCG00000003506
ENSG00000158828
PTEN induced putative kinase 1
Low tissue specificity
Detected in all
PITPNM3
ENSSSCG00000017892
ENSG00000091622
PITPNM family member 3
Tissue enhanced
Detected in many
adrenal gland:
28.9
male glands:
32.4
retina:
34.6
PITX2
ENSSSCG00000034708
ENSG00000164093
Pituitary homeobox 2
Tissue enhanced
Detected in many
cornea:
16.8
large intestine:
18.7
mouth:
13.0
pituitary gland:
35.4
urinary bladder:
12.4
PITX3
ENSSSCG00000010578
ENSG00000107859
Paired like homeodomain 3
Tissue enriched
Detected in some
lens:
102.7
PJVK
ENSSSCG00000015998
ENSG00000204311
Pejvakin
Tissue enhanced
Detected in many
choroid plexus:
12.7
PLA2G5
ENSSSCG00000034429
ENSG00000127472
Phospholipase A2 group V
Low tissue specificity
Detected in all
PLA2G6
ENSSSCG00000000110
ENSG00000184381
Phospholipase A2 group VI
Low tissue specificity
Detected in all
PLCB1
ENSSSCG00000007056
ENSG00000182621
Phospholipase C beta 1
Tissue enhanced
Detected in many
male glands:
57.8
PLD3
ENSSSCG00000025109
ENSG00000105223
Phospholipase D3
Tissue enhanced
Detected in all
brain:
83.4
pituitary gland:
95.2
PLEKHG2
ENSSSCG00000030048
ENSG00000090924
Pleckstrin homology and RhoGEF domain containing G2
Tissue enhanced
Detected in many
vagus nerve:
42.8
PLEKHG5
ENSSSCG00000003376
ENSG00000171680
Pleckstrin homology and RhoGEF domain containing G5
Tissue enhanced
Detected in all
vagus nerve:
45.9
PLP1
ENSSSCG00000012536
ENSG00000123560
Myelin proteolipid protein
Tissue enriched
Detected in some
brain:
604.9
PMP2
ENSSSCG00000036441
ENSG00000147588
Myelin P2 protein
Tissue enriched
Detected in some
brain:
159.9
PMP22
ENSSSCG00000037832
ENSG00000109099
Peripheral myelin protein 22
Tissue enhanced
Detected in many
brain:
106.6
vagus nerve:
291.1
PMPCA
ENSSSCG00000031413
ENSG00000165688
Peptidase, mitochondrial processing alpha subunit
Low tissue specificity
Detected in all
PNKD
ENSSSCG00000029002
ENSG00000127838
Paroxysmal nonkinesigenic dyskinesia
Low tissue specificity
Detected in all
PNKP
ENSSSCG00000003195
ENSG00000039650
Polynucleotide kinase 3'-phosphatase
Low tissue specificity
Detected in all
PNPLA6
ENSSSCG00000013572
ENSG00000032444
Patatin like phospholipase domain containing 6
Low tissue specificity
Detected in all
PNPO
ENSSSCG00000032782
ENSG00000108439
Pyridoxamine 5'-phosphate oxidase
Low tissue specificity
Detected in all
POC1B
ENSSSCG00000000920
ENSG00000139323
POC1 centriolar protein B
Low tissue specificity
Detected in all
POLG
ENSSSCG00000001838
ENSG00000140521
DNA polymerase gamma, catalytic subunit
Low tissue specificity
Detected in all
POLG2
ENSSSCG00000036057
ENSG00000256525
DNA polymerase gamma 2, accessory subunit
Low tissue specificity
Detected in all
POU3F4
ENSSSCG00000012454
ENSG00000196767
POU class 3 homeobox 4
Tissue enriched
Detected in some
brain:
10.6
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