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Chromosome
1
2
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7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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214 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
P14ARF
ENSSSCG00000005134
ENSG00000147889
P14ARF protein
Tissue enriched
Detected in many
testis:
66.5
PAX4
ENSSSCG00000016591
ENSG00000106331
Paired box 4
Tissue enhanced
Detected in some
large intestine:
2.5
ovary:
2.4
small intestine:
7.2
stomach:
1.7
PCSK1
ENSSSCG00000014169
ENSG00000175426
Neuroendocrine convertase 1 precursor
Group enriched
Detected in some
brain:
28.5
pineal gland:
47.8
pituitary gland:
42.7
PDX1
ENSSSCG00000035817
ENSG00000139515
Pancreatic and duodenal homeobox 1
Tissue enhanced
Detected in some
gallbladder:
6.9
small intestine:
29.1
stomach:
9.1
PIK3CA
ENSSSCG00000030413
ENSG00000121879
Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha
Low tissue specificity
Detected in all
PLAGL1
ENSSSCG00000004127
ENSG00000118495
Zinc finger protein PLAGL1
Low tissue specificity
Detected in all
POMC
ENSSSCG00000021155
ENSG00000115138
Pro-opiomelanocortin precursor
Tissue enriched
Detected in some
pituitary gland:
930.7
PON1
ENSSSCG00000015332
ENSG00000005421
Serum paraoxonase/arylesterase 1 precursor
Group enriched
Detected in some
kidney:
41.1
liver:
90.4
POR
ENSSSCG00000038320
ENSG00000127948
NADPH--cytochrome P450 reductase
Low tissue specificity
Detected in all
POU1F1
ENSSSCG00000011996
ENSG00000064835
Pituitary-specific positive transcription factor 1
Tissue enriched
Detected in many
pituitary gland:
76.5
PPARG
ENSSSCG00000011579
ENSG00000132170
Peroxisome proliferator-activated receptor gamma
Tissue enhanced
Detected in many
adipose tissue:
52.9
aorta:
32.5
bone marrow:
41.6
large intestine:
29.5
lymphoid tissue:
33.8
PPARGC1B
ENSSSCG00000014437
ENSG00000155846
PPARG coactivator 1 beta
Tissue enhanced
Detected in many
stomach:
41.6
PRKACA
ENSSSCG00000013771
ENSG00000072062
Protein kinase cAMP-activated catalytic subunit alpha
Low tissue specificity
Detected in all
PRKAR1A
ENSSSCG00000017259
ENSG00000108946
CAMP-dependent protein kinase type I-alpha regulatory subunit
Low tissue specificity
Detected in all
PRKCQ
ENSSSCG00000011131
ENSG00000065675
Protein kinase C theta
Tissue enhanced
Detected in all
choroid plexus:
30.7
lymphoid tissue:
36.3
skeletal muscle:
40.3
testis:
32.0
PRLR
ENSSSCG00000016830
ENSG00000113494
Prolactin receptor precursor
Tissue enhanced
Detected in many
adrenal gland:
51.2
choroid plexus:
87.3
PROK2
ENSSSCG00000026200
ENSG00000163421
Prokineticin 2
Tissue enhanced
Detected in some
brain:
6.9
heart:
11.5
testis:
35.8
PROKR2
ENSSSCG00000037063
ENSG00000101292
Prokineticin receptor 2
Low tissue specificity
Detected in all
PROP1
ENSSSCG00000029569
ENSG00000175325
Homeobox protein prophet of Pit-1
Tissue enriched
Detected in all
pituitary gland:
38.2
PTF1A
ENSSSCG00000030662
ENSG00000168267
Pancreas specific transcription factor, 1a
Tissue enhanced
Detected in some
fallopian tube:
2.4
kidney:
1.7
retina:
2.2
PTH
ENSSSCG00000013394
ENSG00000152266
Parathyroid hormone
Tissue enhanced
Detected in many
brain:
5.7
PTPN22
ENSSSCG00000006764
ENSG00000134242
Protein tyrosine phosphatase, non-receptor type 22
Tissue enhanced
Detected in many
large intestine:
13.3
lymphoid tissue:
29.9
RASD1
ENSSSCG00000034044
ENSG00000108551
Ras related dexamethasone induced 1
Tissue enhanced
Detected in all
epididymis:
28.4
male glands:
47.4
RFX6
ENSSSCG00000039333
ENSG00000185002
Regulatory factor X6
Tissue enhanced
Detected in some
endometrium:
16.0
esophagus:
11.9
salivary gland:
43.3
SDC3
ENSSSCG00000003592
ENSG00000162512
Syndecan 3
Tissue enhanced
Detected in all
brain:
64.9
cartilage:
42.7
SECISBP2
ENSSSCG00000028033
ENSG00000187742
SECIS binding protein 2
Low tissue specificity
Detected in all
SEMA3A
ENSSSCG00000015398
ENSG00000075213
Semaphorin 3A
Tissue enriched
Detected in many
cartilage:
141.5
SERPINA6
ENSSSCG00000002475
ENSG00000170099
Corticosteroid-binding globulin precursor
Tissue enriched
Detected in some
liver:
79.4
SH2B3
ENSSSCG00000009833
ENSG00000111252
SH2B adaptor protein 3
Low tissue specificity
Detected in all
SIM1
ENSSSCG00000004357
ENSG00000112246
Single-minded homolog 1
Tissue enhanced
Detected in some
epididymis:
8.6
kidney:
40.7
male glands:
12.0
SLA-DQB1
ENSSSCG00000001457
ENSG00000179344,ENSG00000232629
SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
129.0
SLC12A1
ENSSSCG00000004659
ENSG00000074803
Solute carrier family 12 member 1
Tissue enriched
Detected in some
kidney:
142.8
SLC12A3
ENSSSCG00000032643
ENSG00000070915
Solute carrier family 12 member 3
Tissue enriched
Detected in single
kidney:
111.7
SLC16A2
ENSSSCG00000029458
ENSG00000147100
Solute carrier family 16 member 2
Tissue enhanced
Detected in all
adrenal gland:
42.6
choroid plexus:
40.3
SLC19A2
ENSSSCG00000006290
ENSG00000117479
Thiamine transporter 1
Low tissue specificity
Detected in all
SLC26A4
ENSSSCG00000028969
ENSG00000091137
Solute carrier family 26 member 4
Tissue enhanced
Detected in all
esophagus:
25.5
SLC30A8
ENSSSCG00000006011
ENSG00000164756
Solute carrier family 30 member 8
Group enriched
Detected in some
brain:
9.7
stomach:
5.6
testis:
22.1
SLC5A5
ENSSSCG00000013890
ENSG00000105641
Sodium/iodide cotransporter
Group enriched
Detected in some
choroid plexus:
68.1
stomach:
42.9
thyroid gland:
100.2
SLC6A14
ENSSSCG00000022372
ENSG00000268104
Solute carrier family 6 member 14
Tissue enhanced
Detected in some
esophagus:
16.5
gallbladder:
23.1
large intestine:
16.9
male glands:
12.2
salivary gland:
12.8
upper respiratory system:
22.5
SOD2
ENSSSCG00000040317
ENSG00000112096,ENSG00000285441
Superoxide dismutase
Tissue enhanced
Detected in all
heart:
69.9
SOX3
ENSSSCG00000022501
ENSG00000134595
SRY-box 3
Group enriched
Detected in some
brain:
7.4
lens:
14.3
pituitary gland:
5.7
vagus nerve:
5.3
SPRTN
ENSSSCG00000040087
ENSG00000010072
SprT-like domain-containing protein Spartan
Low tissue specificity
Detected in all
SPRY4
ENSSSCG00000036322
ENSG00000187678
Sprouty RTK signaling antagonist 4
Low tissue specificity
Detected in many
STAR
ENSSSCG00000034942
ENSG00000147465
Steroidogenic acute regulatory protein, mitochondrial precursor
Group enriched
Detected in some
adrenal gland:
171.0
ovary:
176.9
testis:
78.5
TAC3
ENSSSCG00000000418
ENSG00000166863
Neurokinin-B
Tissue enhanced
Detected in many
brain:
26.5
lymphoid tissue:
25.6
small intestine:
18.8
testis:
26.4
TACR3
ENSSSCG00000009160
ENSG00000169836
Tachykinin receptor 3
Tissue enhanced
Detected in many
fallopian tube:
25.0
ovary:
10.9
pituitary gland:
11.8
TBX19
ENSSSCG00000006299
ENSG00000143178
T-box 19
Tissue enriched
Detected in some
pituitary gland:
44.5
TCF7L2
ENSSSCG00000010638
ENSG00000148737
Transcription factor 7 like 2
Low tissue specificity
Detected in all
TG
ENSSSCG00000005948
ENSG00000042832
Thyroglobulin precursor
Tissue enriched
Detected in some
thyroid gland:
1006.8
THRA
ENSSSCG00000035969
ENSG00000126351
Thyroid hormone receptor alpha
Low tissue specificity
Detected in all
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