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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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214 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KCNJ1
ENSSSCG00000015236
ENSG00000151704
Potassium voltage-gated channel subfamily J member 1
Tissue enriched
Detected in single
kidney:
62.1
KCNJ5
ENSSSCG00000021573
ENSG00000120457
G protein-activated inward rectifier potassium channel 4
Tissue enhanced
Detected in many
adrenal gland:
36.1
epididymis:
18.1
heart:
66.5
KCNQ1
ENSSSCG00000039556
ENSG00000053918
Potassium voltage-gated channel subfamily Q member 1
Tissue enhanced
Detected in many
adrenal gland:
44.5
kidney:
34.7
male glands:
35.3
stomach:
54.3
KISS1
ENSSSCG00000038350
ENSG00000170498
Metastasis-suppressor KiSS-1 precursor
Low tissue specificity
Detected in all
KISS1R
ENSSSCG00000013420
ENSG00000116014
KiSS-1 receptor
Tissue enhanced
Detected in some
brain:
5.4
KLF11
ENSSSCG00000038643
ENSG00000172059
Krueppel-like factor 11
Low tissue specificity
Detected in all
LDLR
ENSSSCG00000028512
ENSG00000130164
Low-density lipoprotein receptor precursor
Tissue enhanced
Detected in many
adrenal gland:
153.0
ovary:
76.4
LEP
ENSSSCG00000040464
ENSG00000174697
Leptin precursor
Group enriched
Detected in some
adipose tissue:
22.8
aorta:
24.7
bone marrow:
23.7
testis:
14.5
LEPR
ENSSSCG00000025188
ENSG00000116678
Leptin receptor precursor
Tissue enhanced
Detected in many
bone marrow:
44.4
choroid plexus:
52.3
LHX3
ENSSSCG00000034657
ENSG00000107187
LIM/homeobox protein Lhx3
Tissue enriched
Detected in some
pituitary gland:
34.8
LHX4
ENSSSCG00000015536
ENSG00000121454
LIM homeobox 4
Tissue enriched
Detected in some
pineal gland:
62.6
LMNA
ENSSSCG00000006496
ENSG00000160789
Prelamin-A/C
Low tissue specificity
Detected in many
LPL
ENSSSCG00000040631
ENSG00000175445
Lipoprotein lipase precursor
Tissue enhanced
Detected in many
adipose tissue:
134.0
aorta:
89.4
bone marrow:
101.4
MC2R
ENSSSCG00000039227
ENSG00000185231
Adrenocorticotropic hormone receptor
Tissue enriched
Detected in some
adrenal gland:
59.6
MC3R
ENSSSCG00000007491
ENSG00000124089
Melanocortin receptor 3
Group enriched
Detected in some
brain:
6.7
pituitary gland:
19.7
MC4R
ENSSSCG00000004904
ENSG00000166603
Melanocortin receptor 4
Group enriched
Detected in some
brain:
17.5
epididymis:
7.4
heart:
8.0
MEN1
ENSSSCG00000013019
ENSG00000133895
Menin 1
Low tissue specificity
Detected in all
MRAP2
ENSSSCG00000026943
ENSG00000135324
Melanocortin 2 receptor accessory protein 2
Tissue enhanced
Detected in many
cervix:
61.1
endometrium:
22.3
male glands:
25.1
MTNR1B
ENSSSCG00000014939
ENSG00000134640
Melatonin receptor 1B
Group enriched
Detected in some
bone marrow:
2.1
brain:
4.6
cartilage:
2.0
endometrium:
1.9
mouth:
5.1
na
ENSSSCG00000001456
ENSG00000196735
SLA class II histocompatibility antigen, DQ haplotype D alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
163.6
na
ENSSSCG00000004836
ENSG00000179455
Tissue enhanced
Detected in many
brain:
13.1
lens:
11.9
na
ENSSSCG00000006719
ENSG00000203857,ENSG00000203859
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase 3-beta-hydroxy-Delta(5)-steroid dehydrogenase Steroid Delta-isomerase
Group enriched
Detected in some
adrenal gland:
375.8
ovary:
293.2
na
ENSSSCG00000007516
ENSG00000124222
Syntaxin-16
Low tissue specificity
Detected in all
na
ENSSSCG00000008421
ENSG00000138039
Sus scrofa lutropin-choriogonadotropic hormone receptor-like (LOC100623180), mRNA.
Group enriched
Detected in many
ovary:
28.1
testis:
49.6
na
ENSSSCG00000010992
ENSG00000165269,ENSG00000259916
Aquaporin-7
Tissue enhanced
Detected in many
adipose tissue:
52.4
aorta:
24.8
bone marrow:
25.6
testis:
54.4
na
ENSSSCG00000012101
ENSG00000011201
Tissue enriched
Detected in some
cartilage:
69.6
na
ENSSSCG00000014097
ENSG00000113231,ENSG00000284762
Tissue enhanced
Detected in many
brain:
29.5
thyroid gland:
26.6
na
ENSSSCG00000020725
ENSG00000065361
Tissue enhanced
Detected in many
liver:
49.6
vagus nerve:
57.8
na
ENSSSCG00000026345
ENSG00000184908,ENSG00000186510
Tissue enriched
Detected in some
kidney:
62.1
na
ENSSSCG00000030560
ENSG00000140443
Insulin-like growth factor 1 receptor precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000031086
ENSG00000104826
Lutropin subunit beta
Tissue enriched
Detected in some
pituitary gland:
196.2
na
ENSSSCG00000031563
ENSG00000160882,ENSG00000179142
Tissue enriched
Detected in some
adrenal gland:
437.0
na
ENSSSCG00000034266
ENSG00000196557
Tissue enhanced
Detected in many
ductus deferens:
33.3
smooth muscle:
41.2
na
ENSSSCG00000035094
ENSG00000175354
Tissue enriched
Detected in single
testis:
2.3
na
ENSSSCG00000038192
ENSG00000011201
Tissue enriched
Detected in many
cartilage:
99.1
na
ENSSSCG00000038903
ENSG00000128655,ENSG00000284741
Tissue enhanced
Detected in many
ductus deferens:
7.0
gallbladder:
7.5
large intestine:
6.4
testis:
10.6
na
ENSSSCG00000039037
ENSG00000165588
Tissue enhanced
Detected in many
testis:
10.3
na
ENSSSCG00000040461
ENSG00000129757
Low tissue specificity
Detected in many
na
ENSSSCG00000040843
ENSG00000170262
Group enriched
Detected in some
adrenal gland:
175.2
ovary:
43.9
NAA25
ENSSSCG00000009887
ENSG00000111300
N(alpha)-acetyltransferase 25, NatB auxiliary subunit
Low tissue specificity
Detected in all
NEUROD1
ENSSSCG00000016011
ENSG00000162992
Neuronal differentiation 1
Group enriched
Detected in some
brain:
90.5
pineal gland:
64.9
retina:
43.6
NKX2-1
ENSSSCG00000001945
ENSG00000136352
Homeobox protein Nkx-2.1 isoform 2
Group enriched
Detected in some
lung:
22.4
thyroid gland:
86.5
NKX2-5
ENSSSCG00000036285
ENSG00000183072
NK2 homeobox 5
Tissue enriched
Detected in some
heart:
34.6
NNT
ENSSSCG00000016877
ENSG00000112992
Nicotinamide nucleotide transhydrogenase
Tissue enhanced
Detected in all
skeletal muscle:
81.1
NOTCH2
ENSSSCG00000006709
ENSG00000134250
Notch 2
Low tissue specificity
Detected in all
NR0B1
ENSSSCG00000012199
ENSG00000169297
Nuclear receptor subfamily 0 group B member 1
Group enriched
Detected in some
adrenal gland:
13.9
male glands:
12.3
pituitary gland:
4.0
testis:
3.6
NR0B2
ENSSSCG00000003565
ENSG00000131910
Nuclear receptor subfamily 0 group B member 2
Tissue enhanced
Detected in many
adrenal gland:
18.5
liver:
25.7
NR3C1
ENSSSCG00000014401
ENSG00000113580
Glucocorticoid receptor
Low tissue specificity
Detected in all
NR5A1
ENSSSCG00000005588
ENSG00000136931
Steroidogenic factor 1
Tissue enriched
Detected in some
adrenal gland:
82.9
NSMF
ENSSSCG00000037880
ENSG00000165802
NMDA receptor synaptonuclear signaling and neuronal migration factor
Tissue enhanced
Detected in all
brain:
71.4
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