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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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912 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KIF7
ENSSSCG00000001840
ENSG00000166813
Kinesin family member 7
Low tissue specificity
Detected in all
KLHL24
ENSSSCG00000011775
ENSG00000114796
Kelch like family member 24
Low tissue specificity
Detected in all
KLLN
ENSSSCG00000034320
ENSG00000227268
Killin, p53 regulated DNA replication inhibitor
Tissue enhanced
Detected in many
large intestine:
4.8
testis:
12.2
KMT2A
ENSSSCG00000023324
ENSG00000118058
Lysine methyltransferase 2A
Low tissue specificity
Detected in all
KMT2C
ENSSSCG00000020663
ENSG00000055609
Lysine methyltransferase 2C
Low tissue specificity
Detected in all
KRAS
ENSSSCG00000026969
ENSG00000133703
KRAS proto-oncogene, GTPase
Low tissue specificity
Detected in all
KREMEN1
ENSSSCG00000009972
ENSG00000183762
Kringle containing transmembrane protein 1
Low tissue specificity
Detected in all
KRT10
ENSSSCG00000028522
ENSG00000186395
Keratin 10
Group enriched
Detected in many
mouth:
93.8
skin:
212.0
KRT13
ENSSSCG00000017445
ENSG00000171401
Keratin 13
Tissue enriched
Detected in some
mouth:
692.3
KRT14
ENSSSCG00000017448
ENSG00000186847
Keratin 14
Tissue enhanced
Detected in many
large intestine:
131.5
mouth:
166.7
skin:
199.4
KRT2
ENSSSCG00000037806
ENSG00000172867
Keratin, type II cytoskeletal 2 epidermal
Tissue enriched
Detected in some
skin:
38.6
KRT25
ENSSSCG00000017464
ENSG00000204897
Keratin 25
Tissue enriched
Detected in some
skin:
155.9
KRT4
ENSSSCG00000024610
ENSG00000170477
Keratin 4
Group enriched
Detected in some
esophagus:
91.9
mouth:
354.0
KRT5
ENSSSCG00000000248
ENSG00000186081
Keratin 5
Group enriched
Detected in many
cornea:
115.8
mouth:
325.7
skin:
162.7
KRT74
ENSSSCG00000028334
ENSG00000170484
Keratin 74
Tissue enriched
Detected in some
skin:
37.9
KRT85
ENSSSCG00000000240
ENSG00000135443
Keratin 85
Tissue enriched
Detected in some
skin:
167.0
L1CAM
ENSSSCG00000012787
ENSG00000198910
L1 cell adhesion molecule
Tissue enhanced
Detected in many
ductus deferens:
55.0
kidney:
58.6
vagus nerve:
52.3
LAMA3
ENSSSCG00000003709
ENSG00000053747
Laminin subunit alpha 3
Tissue enhanced
Detected in many
mesothelial tissue:
32.6
skin:
31.3
LAMB1
ENSSSCG00000015444
ENSG00000091136
Laminin subunit beta 1
Low tissue specificity
Detected in all
LAMB3
ENSSSCG00000015618
ENSG00000196878
Laminin subunit beta 3
Tissue enhanced
Detected in many
thyroid gland:
48.3
LAMC2
ENSSSCG00000015556
ENSG00000058085
Laminin subunit gamma 2
Tissue enhanced
Detected in many
stomach:
44.7
LARP7
ENSSSCG00000009119
ENSG00000174720
La-related protein 7
Low tissue specificity
Detected in all
LARS2
ENSSSCG00000011312
ENSG00000011376
Leucyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
LAS1L
ENSSSCG00000012366
ENSG00000001497
LAS1 like, ribosome biogenesis factor
Low tissue specificity
Detected in all
LBR
ENSSSCG00000032397
ENSG00000143815
Lamin B receptor
Tissue enhanced
Detected in all
lymphoid tissue:
40.7
LEMD3
ENSSSCG00000000469
ENSG00000174106
LEM domain containing 3
Low tissue specificity
Detected in all
LFNG
ENSSSCG00000007572
ENSG00000106003
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Tissue enhanced
Detected in all
male glands:
81.6
LGI4
ENSSSCG00000025126
ENSG00000153902
Leucine rich repeat LGI family member 4
Tissue enhanced
Detected in many
vagus nerve:
94.2
LIFR
ENSSSCG00000016850
ENSG00000113594
LIF receptor alpha
Low tissue specificity
Detected in all
LIPH
ENSSSCG00000011793
ENSG00000163898
Lipase H
Tissue enhanced
Detected in many
ovary:
13.1
stomach:
28.9
LIPN
ENSSSCG00000031373
ENSG00000204020
Lipase family member N
Low tissue specificity
Detected in all
LMBR1
ENSSSCG00000016412
ENSG00000105983
Limb development membrane protein 1
Low tissue specificity
Detected in all
LMNA
ENSSSCG00000006496
ENSG00000160789
Prelamin-A/C
Low tissue specificity
Detected in many
LMX1B
ENSSSCG00000035968
ENSG00000136944
LIM homeobox transcription factor 1-beta
Tissue enhanced
Detected in some
breast:
15.4
cornea:
29.1
LONP1
ENSSSCG00000027128
ENSG00000196365
Lon protease homolog, mitochondrial
Tissue enhanced
Detected in all
adrenal gland:
58.0
LPAR6
ENSSSCG00000036063
ENSG00000139679
Lysophosphatidic acid receptor 6
Low tissue specificity
Detected in all
LRP2
ENSSSCG00000040746
ENSG00000081479
LDL receptor related protein 2
Tissue enriched
Detected in many
kidney:
179.2
LRP4
ENSSSCG00000013248
ENSG00000134569
LDL receptor related protein 4
Tissue enhanced
Detected in many
skin:
40.7
small intestine:
32.8
LRP5
ENSSSCG00000012885
ENSG00000162337
LDL receptor related protein 5
Low tissue specificity
Detected in all
LTBP2
ENSSSCG00000002368
ENSG00000119681
Latent transforming growth factor beta binding protein 2
Tissue enhanced
Detected in many
mesothelial tissue:
67.7
LTBP4
ENSSSCG00000033760
ENSG00000090006
Latent transforming growth factor beta binding protein 4
Low tissue specificity
Detected in many
LZTR1
ENSSSCG00000010097
ENSG00000099949
Leucine zipper like transcription regulator 1
Low tissue specificity
Detected in all
MAB21L2
ENSSSCG00000009022
ENSG00000181541
Mab-21 like 2
Tissue enhanced
Detected in all
smooth muscle:
43.5
MAGEL2
ENSSSCG00000004835
ENSG00000254585
MAGE family member L2
Tissue enhanced
Detected in many
brain:
19.3
pituitary gland:
9.7
MAP2K1
ENSSSCG00000004943
ENSG00000169032
Dual specificity mitogen-activated protein kinase kinase 1
Tissue enhanced
Detected in all
brain:
54.6
MAP2K2
ENSSSCG00000027127
ENSG00000126934,ENSG00000230626
Dual specificity mitogen-activated protein kinase kinase 2
Low tissue specificity
Detected in all
MAP3K20
ENSSSCG00000015960
ENSG00000091436
Mitogen-activated protein kinase kinase kinase 20
Tissue enhanced
Detected in all
skeletal muscle:
78.1
MAP3K7
ENSSSCG00000004334
ENSG00000135341
Mitogen-activated protein kinase kinase kinase 7
Low tissue specificity
Detected in all
MAPKBP1
ENSSSCG00000004738
ENSG00000137802
Mitogen-activated protein kinase binding protein 1
Low tissue specificity
Detected in all
MAPRE2
ENSSSCG00000003738
ENSG00000166974
Microtubule associated protein RP/EB family member 2
Tissue enhanced
Detected in all
brain:
60.4
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