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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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912 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
HSPG2
ENSSSCG00000003514
ENSG00000142798
Heparan sulfate proteoglycan 2
Low tissue specificity
Detected in many
HYLS1
ENSSSCG00000024913
ENSG00000198331
HYLS1, centriolar and ciliogenesis associated
Tissue enhanced
Detected in all
testis:
46.5
IARS
ENSSSCG00000008068
ENSG00000196305
Isoleucyl-tRNA synthetase
Low tissue specificity
Detected in all
IARS2
ENSSSCG00000010823
ENSG00000067704
Isoleucyl-tRNA synthetase 2, mitochondrial
Low tissue specificity
Detected in all
ICK
ENSSSCG00000002628
ENSG00000112144
Intestinal cell kinase
Low tissue specificity
Detected in all
IFIH1
ENSSSCG00000015897
ENSG00000115267
Interferon-induced helicase C domain-containing protein 1
Low tissue specificity
Detected in all
IFITM5
ENSSSCG00000040278
ENSG00000206013
Interferon induced transmembrane protein 5
Tissue enhanced
Detected in many
brain:
21.2
testis:
14.1
IFT122
ENSSSCG00000011589
ENSG00000163913
Intraflagellar transport 122
Low tissue specificity
Detected in all
IFT140
ENSSSCG00000008020
ENSG00000187535
Intraflagellar transport 140
Low tissue specificity
Detected in all
IFT172
ENSSSCG00000026367
ENSG00000138002
Intraflagellar transport 172
Low tissue specificity
Detected in all
IFT43
ENSSSCG00000002386
ENSG00000119650
Intraflagellar transport 43
Low tissue specificity
Detected in all
IFT52
ENSSSCG00000007364
ENSG00000101052
Intraflagellar transport 52
Low tissue specificity
Detected in all
IFT57
ENSSSCG00000011941
ENSG00000114446
Intraflagellar transport 57
Tissue enhanced
Detected in all
lens:
117.6
IFT80
ENSSSCG00000011733
ENSG00000068885
Intraflagellar transport 80
Low tissue specificity
Detected in all
IFT81
ENSSSCG00000009818
ENSG00000122970
Intraflagellar transport 81
Low tissue specificity
Detected in all
IHH
ENSSSCG00000016204
ENSG00000163501
Indian hedgehog protein precursor
Tissue enhanced
Detected in all
gallbladder:
28.2
large intestine:
31.5
stomach:
38.3
IKBKG
ENSSSCG00000012825
ENSG00000269335
NF-kappa-B essential modulator
Low tissue specificity
Detected in all
IL11RA
ENSSSCG00000010968
ENSG00000137070
Interleukin 11 receptor subunit alpha
Low tissue specificity
Detected in all
IMPAD1
ENSSSCG00000032846
ENSG00000104331
Inositol monophosphatase 3
Low tissue specificity
Detected in all
INPP5E
ENSSSCG00000040869
ENSG00000148384
Inositol polyphosphate-5-phosphatase E
Low tissue specificity
Detected in all
INPPL1
ENSSSCG00000014811
ENSG00000165458
Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2
Low tissue specificity
Detected in all
INTU
ENSSSCG00000009079
ENSG00000164066
Inturned planar cell polarity protein
Tissue enhanced
Detected in many
choroid plexus:
20.6
INVS
ENSSSCG00000005388
ENSG00000119509
Inversin
Low tissue specificity
Detected in all
IQCB1
ENSSSCG00000011881
ENSG00000173226
IQ motif containing B1
Low tissue specificity
Detected in all
IQCE
ENSSSCG00000007568
ENSG00000106012
IQ motif containing E
Tissue enhanced
Detected in all
testis:
75.9
IRF6
ENSSSCG00000015612
ENSG00000117595
Interferon regulatory factor 6
Low tissue specificity
Detected in all
IRX5
ENSSSCG00000032145
ENSG00000176842
Iroquois homeobox 5
Tissue enhanced
Detected in many
breast:
32.9
male glands:
51.4
ISPD
ENSSSCG00000015358
ENSG00000214960
Isoprenoid synthase domain containing
Tissue enhanced
Detected in all
choroid plexus:
28.9
ITGA6
ENSSSCG00000015955
ENSG00000091409
Integrin subunit alpha 6
Low tissue specificity
Detected in all
ITGA8
ENSSSCG00000011046
ENSG00000077943
Integrin subunit alpha 8
Tissue enhanced
Detected in many
cervix:
61.7
endometrium:
34.7
fallopian tube:
40.9
ITGB4
ENSSSCG00000017204
ENSG00000132470
Integrin subunit beta 4
Tissue enhanced
Detected in many
vagus nerve:
116.2
ITM2B
ENSSSCG00000009403
ENSG00000136156
Integral membrane protein 2B
Tissue enriched
Detected in all
epididymis:
329.8
JAG1
ENSSSCG00000007067
ENSG00000101384
Jagged 1
Low tissue specificity
Detected in all
KAT6B
ENSSSCG00000010316
ENSG00000156650
Lysine acetyltransferase 6B
Low tissue specificity
Detected in all
KATNB1
ENSSSCG00000002813
ENSG00000140854
Katanin regulatory subunit B1
Tissue enhanced
Detected in all
testis:
44.4
KCNK9
ENSSSCG00000033397
ENSG00000169427
Potassium two pore domain channel subfamily K member 9
Group enriched
Detected in some
adrenal gland:
6.8
brain:
18.3
male glands:
15.5
KDF1
ENSSSCG00000003567
ENSG00000175707
Keratinocyte differentiation factor 1
Low tissue specificity
Detected in many
KDM1A
ENSSSCG00000003531
ENSG00000004487
Lysine-specific histone demethylase 1A
Low tissue specificity
Detected in all
KDM6A
ENSSSCG00000012262
ENSG00000147050
Lysine demethylase 6A
Low tissue specificity
Detected in all
KDSR
ENSSSCG00000025744
ENSG00000119537
3-ketodihydrosphingosine reductase
Low tissue specificity
Detected in all
KERA
ENSSSCG00000000917
ENSG00000139330
Keratocan
Tissue enriched
Detected in many
cornea:
288.6
KIAA0556
ENSSSCG00000007814
ENSG00000047578
KIAA0556
Tissue enhanced
Detected in all
retina:
40.2
KIAA0586
ENSSSCG00000005076
ENSG00000100578
KIAA0586
Low tissue specificity
Detected in all
KIAA0753
ENSSSCG00000017890
ENSG00000198920
KIAA0753
Low tissue specificity
Detected in all
KIF11
ENSSSCG00000010471
ENSG00000138160
Kinesin family member 11
Tissue enhanced
Detected in many
lymphoid tissue:
33.9
KIF14
ENSSSCG00000010912
ENSG00000118193
Kinesin family member 14
Tissue enhanced
Detected in many
lymphoid tissue:
17.3
testis:
19.9
KIF1BP
ENSSSCG00000010248
ENSG00000198954
KIF1 binding protein
Tissue enhanced
Detected in all
brain:
31.2
KIF22
ENSSSCG00000029509
ENSG00000079616
Kinesin-like protein KIF22
Tissue enhanced
Detected in all
lymphoid tissue:
26.9
KIF2A
ENSSSCG00000030186
ENSG00000068796
Kinesin-like protein KIF2A
Low tissue specificity
Detected in all
KIF5C
ENSSSCG00000022919
ENSG00000168280
Kinesin family member 5C
Tissue enhanced
Detected in some
brain:
58.3
lens:
28.9
pituitary gland:
16.0
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