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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Biological process
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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912 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MASP1
ENSSSCG00000011806
ENSG00000127241
Mannan-binding lectin serine protease 1 precursor
Group enriched
Detected in many
heart:
26.5
liver:
53.5
MATN3
ENSSSCG00000008603
ENSG00000132031
Matrilin 3
Tissue enriched
Detected in some
cartilage:
79.3
MBTPS2
ENSSSCG00000012165
ENSG00000012174
Membrane bound transcription factor peptidase, site 2
Low tissue specificity
Detected in all
MCPH1
ENSSSCG00000015754
ENSG00000147316
Microcephalin 1
Tissue enhanced
Detected in all
lymphoid tissue:
31.7
MECOM
ENSSSCG00000011743
ENSG00000085276
MDS1 and EVI1 complex locus
Tissue enhanced
Detected in many
thyroid gland:
67.1
MECP2
ENSSSCG00000034742
ENSG00000169057
Methyl-CpG binding protein 2
Low tissue specificity
Detected in all
MED12
ENSSSCG00000012396
ENSG00000184634
Mediator complex subunit 12
Low tissue specificity
Detected in all
MEGF8
ENSSSCG00000003021
ENSG00000105429
Multiple EGF like domains 8
Low tissue specificity
Detected in all
MEIS2
ENSSSCG00000004795
ENSG00000134138
Meis homeobox 2
Tissue enhanced
Detected in many
brain:
76.8
cervix:
58.1
MEOX1
ENSSSCG00000017376
ENSG00000005102
Mesenchyme homeobox 1
Tissue enhanced
Detected in many
mesothelial tissue:
38.0
MESP2
ENSSSCG00000001848
ENSG00000188095
Mesoderm posterior bHLH transcription factor 2
Low tissue specificity
Detected in all
MFRP
ENSSSCG00000015119
ENSG00000235718
Membrane frizzled-related protein
Tissue enriched
Detected in some
choroid plexus:
190.0
MFSD2A
ENSSSCG00000003669
ENSG00000168389
Major facilitator superfamily domain containing 2A
Low tissue specificity
Detected in all
MGP
ENSSSCG00000037697
ENSG00000111341
Matrix Gla protein
Tissue enhanced
Detected in many
aorta:
118.7
dura mater:
144.7
mesothelial tissue:
126.3
MID1
ENSSSCG00000012110
ENSG00000101871
Midline 1
Low tissue specificity
Detected in all
MKKS
ENSSSCG00000007064
ENSG00000125863
McKusick-Kaufman syndrome
Low tissue specificity
Detected in all
MKS1
ENSSSCG00000017635
ENSG00000011143
Meckel syndrome, type 1
Low tissue specificity
Detected in all
MMP13
ENSSSCG00000014988
ENSG00000137745
Matrix metallopeptidase 13
Group enriched
Detected in some
bone marrow:
49.1
dura mater:
123.1
MMP19
ENSSSCG00000000368
ENSG00000123342
Matrix metallopeptidase 19
Tissue enhanced
Detected in many
liver:
39.5
ovary:
32.3
MMP9
ENSSSCG00000007436
ENSG00000100985
Matrix metalloproteinase-9 precursor
Tissue enriched
Detected in many
dura mater:
85.1
MNX1
ENSSSCG00000016410
ENSG00000130675
Motor neuron and pancreas homeobox 1
Group enriched
Detected in some
brain:
7.3
large intestine:
8.7
small intestine:
12.0
stomach:
9.7
MPDZ
ENSSSCG00000005191
ENSG00000107186
Multiple PDZ domain crumbs cell polarity complex component
Low tissue specificity
Detected in all
MSMO1
ENSSSCG00000008857
ENSG00000052802
Methylsterol monooxygenase 1
Tissue enhanced
Detected in all
brain:
67.2
liver:
52.2
ovary:
61.3
MSX1
ENSSSCG00000008727
ENSG00000163132
Homeobox protein MSX-1
Tissue enhanced
Detected in many
choroid plexus:
36.0
endometrium:
42.5
penis:
30.6
MSX2
ENSSSCG00000034500
ENSG00000120149
Msh homeobox 2
Tissue enhanced
Detected in many
choroid plexus:
21.7
endometrium:
22.5
skin:
33.8
MTHFD1
ENSSSCG00000002269
ENSG00000100714
Methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1
Tissue enhanced
Detected in all
liver:
47.6
MTHFR
ENSSSCG00000003428
ENSG00000177000
Methylenetetrahydrofolate reductase
Tissue enriched
Detected in all
epididymis:
94.0
MTOR
ENSSSCG00000003413
ENSG00000198793
Mechanistic target of rapamycin kinase
Low tissue specificity
Detected in all
MTR
ENSSSCG00000010143
ENSG00000116984
5-methyltetrahydrofolate-homocysteine methyltransferase
Low tissue specificity
Detected in all
MTRR
ENSSSCG00000017100
ENSG00000124275
5-methyltetrahydrofolate-homocysteine methyltransferase reductase
Low tissue specificity
Detected in all
MVD
ENSSSCG00000034905
ENSG00000167508
Mevalonate diphosphate decarboxylase
Low tissue specificity
Detected in all
MVK
ENSSSCG00000009931
ENSG00000110921
Mevalonate kinase
Tissue enriched
Detected in many
liver:
84.3
MYBPC1
ENSSSCG00000000866
ENSG00000196091
Myosin binding protein C, slow type
Tissue enriched
Detected in some
skeletal muscle:
331.7
MYCN
ENSSSCG00000008618
ENSG00000134323
MYCN proto-oncogene, bHLH transcription factor
Tissue enhanced
Detected in all
skin:
26.8
MYH11
ENSSSCG00000000146
ENSG00000133392
Myosin heavy chain 11
Tissue enhanced
Detected in many
ductus deferens:
178.9
smooth muscle:
565.6
urinary bladder:
187.5
MYH3
ENSSSCG00000018007
ENSG00000109063
Myosin heavy chain 3
Tissue enriched
Detected in many
male glands:
85.8
MYH8
ENSSSCG00000018005
ENSG00000133020
Myosin heavy chain 8
Group enriched
Detected in some
male glands:
66.3
mouth:
23.3
MYMK
ENSSSCG00000022891
ENSG00000187616
Myomaker, myoblast fusion factor
Tissue enhanced
Detected in many
heart:
28.3
liver:
14.1
MYO18B
ENSSSCG00000009957
ENSG00000133454
Myosin XVIIIB
Group enriched
Detected in some
heart:
26.2
skeletal muscle:
58.3
na
ENSSSCG00000000191
ENSG00000167548
Low tissue specificity
Detected in all
na
ENSSSCG00000000245
ENSG00000170465,ENSG00000205420
Group enriched
Detected in some
mouth:
222.9
skin:
58.5
na
ENSSSCG00000000959
ENSG00000133424
Low tissue specificity
Detected in all
na
ENSSSCG00000002440
ENSG00000015133
Tissue enhanced
Detected in many
stomach:
46.9
na
ENSSSCG00000002708
ENSG00000205084
Low tissue specificity
Detected in all
na
ENSSSCG00000002746
ENSG00000102967
Tissue enhanced
Detected in all
liver:
38.3
na
ENSSSCG00000003045
ENSG00000105409
Sodium/potassium-transporting ATPase subunit alpha-3
Group enriched
Detected in some
brain:
82.1
pineal gland:
64.1
retina:
91.4
na
ENSSSCG00000004274
ENSG00000112280
Tissue enriched
Detected in some
cartilage:
165.0
na
ENSSSCG00000004441
ENSG00000111817
Tissue enhanced
Detected in many
cartilage:
62.7
na
ENSSSCG00000004701
ENSG00000166762
Cation channel sperm-associated protein 2
Tissue enhanced
Detected in all
epididymis:
28.3
na
ENSSSCG00000005735
ENSG00000165699
Tissue enhanced
Detected in many
testis:
22.5
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