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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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912 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
TBXT
ENSSSCG00000036609
ENSG00000164458
T-box transcription factor T
Group enriched
Detected in some
mouth:
3.7
pituitary gland:
6.2
testis:
6.4
TCF12
ENSSSCG00000004600
ENSG00000140262
Transcription factor 12
Tissue enhanced
Detected in all
lymphoid tissue:
84.4
TCF4
ENSSSCG00000004535
ENSG00000196628
Transcription factor 4
Tissue enhanced
Detected in all
cartilage:
122.8
TCIRG1
ENSSSCG00000012890
ENSG00000110719
T cell immune regulator 1, ATPase H+ transporting V0 subunit a3
Low tissue specificity
Detected in many
TCTN1
ENSSSCG00000009826
ENSG00000204852
Tectonic family member 1
Tissue enhanced
Detected in all
choroid plexus:
36.2
TCTN2
ENSSSCG00000009768
ENSG00000168778
Tectonic family member 2
Low tissue specificity
Detected in all
TCTN3
ENSSSCG00000010496
ENSG00000119977
Tectonic family member 3
Low tissue specificity
Detected in all
TEK
ENSSSCG00000005122
ENSG00000120156
TEK receptor tyrosine kinase
Low tissue specificity
Detected in many
TELO2
ENSSSCG00000008022
ENSG00000100726
Telomere maintenance 2
Low tissue specificity
Detected in all
TFAP2A
ENSSSCG00000001036
ENSG00000137203
Transcription factor AP-2 alpha
Tissue enhanced
Detected in many
epididymis:
64.5
male glands:
52.5
skin:
56.0
TFAP2B
ENSSSCG00000025535
ENSG00000008196
Transcription factor AP-2-beta
Group enriched
Detected in many
breast:
49.4
epididymis:
82.5
TGDS
ENSSSCG00000009491
ENSG00000088451
TDP-glucose 4,6-dehydratase
Low tissue specificity
Detected in all
TGFB1
ENSSSCG00000003017
ENSG00000105329
Transforming growth factor beta-1 precursor
Low tissue specificity
Detected in all
TGFB3
ENSSSCG00000002385
ENSG00000119699
Transforming growth factor beta-3 precursor
Tissue enhanced
Detected in many
cartilage:
37.8
penis:
51.2
TGIF1
ENSSSCG00000024174
ENSG00000177426
Homeobox protein TGIF1 isoform c
Low tissue specificity
Detected in many
TGM1
ENSSSCG00000001993
ENSG00000092295
Transglutaminase 1
Tissue enhanced
Detected in many
mouth:
29.6
skin:
12.8
TGM5
ENSSSCG00000004713
ENSG00000104055
Transglutaminase 5
Tissue enhanced
Detected in some
lens:
31.9
ovary:
20.4
THOC6
ENSSSCG00000023315
ENSG00000131652
THO complex subunit 6 homolog
Low tissue specificity
Detected in all
TINF2
ENSSSCG00000001994
ENSG00000092330
TERF1 interacting nuclear factor 2
Low tissue specificity
Detected in all
TMCO1
ENSSSCG00000037314
ENSG00000143183
Calcium load-activated calcium channel
Low tissue specificity
Detected in all
TMEM107
ENSSSCG00000027528
ENSG00000179029
Transmembrane protein 107
Low tissue specificity
Detected in all
TMEM138
ENSSSCG00000037843
ENSG00000149483
Transmembrane protein 138
Low tissue specificity
Detected in all
TMEM216
ENSSSCG00000013084
ENSG00000187049
Transmembrane protein 216
Low tissue specificity
Detected in all
TMEM237
ENSSSCG00000035161
ENSG00000155755
Transmembrane protein 237
Tissue enriched
Detected in many
retina:
47.9
TMEM38B
ENSSSCG00000039896
ENSG00000095209
Trimeric intracellular cation channel type B
Low tissue specificity
Detected in all
TMEM67
ENSSSCG00000006108
ENSG00000164953
Transmembrane protein 67
Low tissue specificity
Detected in all
TMEM98
ENSSSCG00000017727
ENSG00000006042
Transmembrane protein 98
Tissue enhanced
Detected in all
mesothelial tissue:
54.6
TMTC3
ENSSSCG00000000927
ENSG00000139324
Transmembrane and tetratricopeptide repeat containing 3
Low tissue specificity
Detected in all
TNFRSF11A
ENSSSCG00000004898
ENSG00000141655
TNF receptor superfamily member 11a
Low tissue specificity
Detected in many
TNFSF11
ENSSSCG00000009429
ENSG00000120659
TNF superfamily member 11
Low tissue specificity
Detected in all
TNNI2
ENSSSCG00000033260
ENSG00000130598
Troponin I, fast skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
579.8
TNNT3
ENSSSCG00000031903
ENSG00000130595
Troponin T, fast skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
638.7
TP53RK
ENSSSCG00000007452
ENSG00000172315
TP53 regulating kinase
Low tissue specificity
Detected in all
TP63
ENSSSCG00000025592
ENSG00000073282
Tumor protein p63
Tissue enhanced
Detected in many
mouth:
48.3
skin:
103.2
urinary bladder:
41.9
TPM2
ENSSSCG00000005316
ENSG00000198467
Tropomyosin beta chain
Tissue enriched
Detected in many
skeletal muscle:
765.9
TPRKB
ENSSSCG00000008297
ENSG00000144034
EKC/KEOPS complex subunit TPRKB
Low tissue specificity
Detected in all
TRAF3IP1
ENSSSCG00000025228
ENSG00000204104
TRAF3 interacting protein 1
Low tissue specificity
Detected in all
TRAIP
ENSSSCG00000026977
ENSG00000183763
TRAF interacting protein
Tissue enhanced
Detected in many
lymphoid tissue:
14.5
TRAPPC2
ENSSSCG00000012124
ENSG00000196459,ENSG00000256060
Trafficking protein particle complex subunit 2
Tissue enhanced
Detected in all
lens:
35.7
TRIM36
ENSSSCG00000014214
ENSG00000152503
Tripartite motif containing 36
Tissue enhanced
Detected in many
brain:
18.7
cervix:
24.4
testis:
89.9
TRIM37
ENSSSCG00000023727
ENSG00000108395
Tripartite motif containing 37
Low tissue specificity
Detected in all
TRIM44
ENSSSCG00000013295
ENSG00000166326
Tripartite motif containing 44
Low tissue specificity
Detected in all
TRIP11
ENSSSCG00000002445
ENSG00000100815
Thyroid hormone receptor interactor 11
Low tissue specificity
Detected in all
TRMT10A
ENSSSCG00000009180
ENSG00000145331
TRNA methyltransferase 10 homolog A
Low tissue specificity
Detected in all
TRPM4
ENSSSCG00000022672
ENSG00000130529
Transient receptor potential cation channel subfamily M member 4
Tissue enhanced
Detected in many
stomach:
82.0
TRPS1
ENSSSCG00000006018
ENSG00000104447
Transcriptional repressor GATA binding 1
Tissue enhanced
Detected in all
cartilage:
75.0
male glands:
80.1
TRPV3
ENSSSCG00000017862
ENSG00000167723
Transient receptor potential cation channel subfamily V member 3
Tissue enhanced
Detected in some
large intestine:
9.4
mouth:
11.1
skin:
39.3
vagus nerve:
9.8
TRPV4
ENSSSCG00000009929
ENSG00000111199
Transient receptor potential cation channel subfamily V member 4
Tissue enriched
Detected in many
cartilage:
99.6
TSC2
ENSSSCG00000008040
ENSG00000103197
TSC complex subunit 2
Low tissue specificity
Detected in all
TSHZ1
ENSSSCG00000004861
ENSG00000179981
Teashirt zinc finger homeobox 1
Low tissue specificity
Detected in all
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