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Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
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Cornea
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Dura mater
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Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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912 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SMAD6
ENSSSCG00000004948
ENSG00000137834
SMAD family member 6
Low tissue specificity
Detected in many
SMARCA2
ENSSSCG00000005232
ENSG00000080503
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Low tissue specificity
Detected in all
SMARCA4
ENSSSCG00000013629
ENSG00000127616
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Low tissue specificity
Detected in all
SMARCAD1
ENSSSCG00000009193
ENSG00000163104
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
Low tissue specificity
Detected in all
SMARCAL1
ENSSSCG00000035501
ENSG00000138375
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1
Low tissue specificity
Detected in all
SMARCB1
ENSSSCG00000010070
ENSG00000099956
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
Low tissue specificity
Detected in all
SMARCC2
ENSSSCG00000000382
ENSG00000139613
SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Low tissue specificity
Detected in all
SMARCE1
ENSSSCG00000039137
ENSG00000073584
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Low tissue specificity
Detected in all
SMC1A
ENSSSCG00000012325
ENSG00000072501
Structural maintenance of chromosomes 1A
Tissue enhanced
Detected in all
liver:
76.5
SMC3
ENSSSCG00000010625
ENSG00000108055
Structural maintenance of chromosomes 3
Low tissue specificity
Detected in all
SMG9
ENSSSCG00000003068
ENSG00000105771
SMG9, nonsense mediated mRNA decay factor
Low tissue specificity
Detected in all
SMOC1
ENSSSCG00000002314
ENSG00000198732
SPARC related modular calcium binding 1
Tissue enhanced
Detected in many
brain:
35.5
cartilage:
36.3
lymphoid tissue:
50.0
SNAP29
ENSSSCG00000010094
ENSG00000099940
Synaptosome associated protein 29
Low tissue specificity
Detected in all
SNX10
ENSSSCG00000037598
ENSG00000086300
Sorting nexin 10
Tissue enhanced
Detected in many
brain:
32.5
epididymis:
20.9
pineal gland:
25.2
SON
ENSSSCG00000023674
ENSG00000159140
SON DNA binding protein
Low tissue specificity
Detected in all
SOS1
ENSSSCG00000008478
ENSG00000115904
SOS Ras/Rac guanine nucleotide exchange factor 1
Low tissue specificity
Detected in all
SOS2
ENSSSCG00000005015
ENSG00000100485
SOS Ras/Rho guanine nucleotide exchange factor 2
Low tissue specificity
Detected in all
SOST
ENSSSCG00000039204
ENSG00000167941
Sclerostin
Tissue enhanced
Detected in some
aorta:
5.3
bone marrow:
6.7
male glands:
4.0
urinary bladder:
6.6
SOX10
ENSSSCG00000039315
ENSG00000100146
Transcription factor SOX-10
Tissue enhanced
Detected in many
brain:
61.7
salivary gland:
39.3
vagus nerve:
94.8
SOX11
ENSSSCG00000008649
ENSG00000176887
SRY-box 11
Group enriched
Detected in some
brain:
18.5
heart:
10.2
upper respiratory system:
5.6
SOX18
ENSSSCG00000037865
ENSG00000203883
SRY-box 18
Tissue enhanced
Detected in many
adipose tissue:
49.2
SOX2
ENSSSCG00000037485
ENSG00000181449
Transcription factor SOX-2
Tissue enhanced
Detected in some
brain:
34.9
lens:
38.2
upper respiratory system:
15.2
SOX3
ENSSSCG00000022501
ENSG00000134595
SRY-box 3
Group enriched
Detected in some
brain:
7.4
lens:
14.3
pituitary gland:
5.7
vagus nerve:
5.3
SOX4
ENSSSCG00000001081
ENSG00000124766
SRY-box 4
Tissue enhanced
Detected in many
cartilage:
67.4
SOX9
ENSSSCG00000017251
ENSG00000125398
SRY-box 9
Tissue enriched
Detected in many
cartilage:
161.2
SP7
ENSSSCG00000034328
ENSG00000170374
Sp7 transcription factor
Group enriched
Detected in many
bone marrow:
15.2
brain:
11.4
cartilage:
23.7
dura mater:
28.3
SPARC
ENSSSCG00000017082
ENSG00000113140
SPARC precursor
Tissue enhanced
Detected in all
cartilage:
551.7
SPINK5
ENSSSCG00000014422
ENSG00000133710
Serine peptidase inhibitor, Kazal type 5
Tissue enhanced
Detected in some
esophagus:
19.0
mouth:
96.6
skin:
26.0
SPRED1
ENSSSCG00000039393
ENSG00000166068
Sprouty related EVH1 domain containing 1
Low tissue specificity
Detected in all
ST14
ENSSSCG00000015246
ENSG00000149418
Suppression of tumorigenicity 14
Tissue enhanced
Detected in many
male glands:
36.3
stomach:
56.4
STAMBP
ENSSSCG00000008300
ENSG00000124356
STAM binding protein
Low tissue specificity
Detected in all
STIL
ENSSSCG00000003888
ENSG00000123473
STIL, centriolar assembly protein
Low tissue specificity
Detected in all
STRA6
ENSSSCG00000001909
ENSG00000137868
Stimulated by retinoic acid 6
Tissue enhanced
Detected in many
kidney:
79.5
lens:
35.1
STRADA
ENSSSCG00000017290
ENSG00000266173
STE20-related kinase adaptor alpha
Tissue enhanced
Detected in all
testis:
59.2
STRC
ENSSSCG00000004702
ENSG00000242866
Stereocilin
Tissue enhanced
Detected in many
retina:
6.6
SUFU
ENSSSCG00000010586
ENSG00000107882
SUFU negative regulator of hedgehog signaling
Tissue enhanced
Detected in all
epididymis:
70.9
SULT2B1
ENSSSCG00000023280
ENSG00000088002
Sulfotransferase family cytosolic 2B member 1
Tissue enhanced
Detected in many
ductus deferens:
19.4
mouth:
37.2
upper respiratory system:
26.7
SUMO1
ENSSSCG00000035842
ENSG00000116030
Small ubiquitin-related modifier 1
Low tissue specificity
Detected in all
TAF6
ENSSSCG00000034153
ENSG00000106290
TATA-box binding protein associated factor 6
Low tissue specificity
Detected in all
TAPT1
ENSSSCG00000021828
ENSG00000169762
Transmembrane anterior posterior transformation 1
Low tissue specificity
Detected in all
TBC1D20
ENSSSCG00000036081
ENSG00000125875
TBC1 domain family member 20
Tissue enhanced
Detected in all
lymphoid tissue:
50.1
TBCK
ENSSSCG00000021784
ENSG00000145348
TBC1 domain containing kinase
Low tissue specificity
Detected in all
TBL1XR1
ENSSSCG00000011760
ENSG00000177565
Transducin beta like 1 X-linked receptor 1
Low tissue specificity
Detected in all
TBX15
ENSSSCG00000006725
ENSG00000092607
T-box 15
Tissue enhanced
Detected in many
cartilage:
46.3
mouth:
36.9
skeletal muscle:
74.2
synovial tissue:
31.8
TBX18
ENSSSCG00000004290
ENSG00000112837
T-box 18
Tissue enriched
Detected in many
cartilage:
52.6
TBX22
ENSSSCG00000012449
ENSG00000122145
T-box 22
Low tissue specificity
Detected in all
TBX3
ENSSSCG00000009865
ENSG00000135111
T-box 3
Tissue enhanced
Detected in many
adrenal gland:
41.2
male glands:
87.6
thyroid gland:
38.6
TBX4
ENSSSCG00000022980
ENSG00000121075
T-box transcription factor TBX4
Tissue enhanced
Detected in many
cartilage:
44.1
lung:
21.4
penis:
14.5
urinary bladder:
19.8
TBX5
ENSSSCG00000009867
ENSG00000089225
T-box 5
Tissue enriched
Detected in some
heart:
65.3
TBX6
ENSSSCG00000034774
ENSG00000149922
T-box 6
Low tissue specificity
Detected in all
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