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Chromosome
1
2
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7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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912 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RNF135
ENSSSCG00000017737
ENSG00000181481
Ring finger protein 135
Low tissue specificity
Detected in all
ROR2
ENSSSCG00000009593
ENSG00000169071
Receptor tyrosine kinase like orphan receptor 2
Tissue enhanced
Detected in many
cervix:
28.8
smooth muscle:
37.0
RPGRIP1L
ENSSSCG00000031652
ENSG00000103494
RPGRIP1 like
Low tissue specificity
Detected in all
RPS6KA3
ENSSSCG00000012163
ENSG00000177189
Ribosomal protein S6 kinase A3
Tissue enhanced
Detected in all
male glands:
66.0
RSPO4
ENSSSCG00000007197
ENSG00000101282
R-spondin 4
Tissue enriched
Detected in some
synovial tissue:
33.8
RSPRY1
ENSSSCG00000002820
ENSG00000159579
Ring finger and SPRY domain containing 1
Low tissue specificity
Detected in all
RTTN
ENSSSCG00000032574
ENSG00000176225
Rotatin
Tissue enhanced
Detected in all
male glands:
45.4
RUNX2
ENSSSCG00000001710
ENSG00000124813
Runt related transcription factor 2
Tissue enhanced
Detected in many
ovary:
40.2
stomach:
49.4
RXYLT1
ENSSSCG00000000462
ENSG00000118600
Ribitol xylosyltransferase 1
Tissue enhanced
Detected in all
testis:
41.0
SALL1
ENSSSCG00000002836
ENSG00000103449
Spalt like transcription factor 1
Tissue enhanced
Detected in many
kidney:
21.5
lens:
43.4
liver:
21.1
pineal gland:
26.1
thyroid gland:
31.4
SALL2
ENSSSCG00000022705
ENSG00000165821
Spalt like transcription factor 2
Tissue enhanced
Detected in many
brain:
41.7
pituitary gland:
29.5
SALL4
ENSSSCG00000007479
ENSG00000101115
Sal-like protein 4
Tissue enhanced
Detected in all
male glands:
19.1
SART3
ENSSSCG00000009946
ENSG00000075856
Squamous cell carcinoma antigen recognized by T cells 3
Low tissue specificity
Detected in all
SASS6
ENSSSCG00000028821
ENSG00000156876
SAS-6 centriolar assembly protein
Tissue enhanced
Detected in all
liver:
34.5
lymphoid tissue:
27.4
SAT1
ENSSSCG00000012173
ENSG00000130066
Diamine acetyltransferase 1
Tissue enhanced
Detected in all
adrenal gland:
214.6
SBDS
ENSSSCG00000007732
ENSG00000126524
Ribosome maturation protein SBDS
Tissue enhanced
Detected in all
lens:
115.3
SC5D
ENSSSCG00000028517
ENSG00000109929
Sterol-C5-desaturase
Tissue enhanced
Detected in all
brain:
42.8
liver:
49.5
male glands:
37.0
SCARF2
ENSSSCG00000010109
ENSG00000244486
Scavenger receptor class F member 2
Low tissue specificity
Detected in many
SDCCAG8
ENSSSCG00000035136
ENSG00000054282
Serologically defined colon cancer antigen 8
Low tissue specificity
Detected in all
SDHB
ENSSSCG00000020926
ENSG00000117118
Succinate dehydrogenase
Tissue enhanced
Detected in all
skeletal muscle:
86.3
SDR9C7
ENSSSCG00000000415
ENSG00000170426
Short chain dehydrogenase/reductase family 9C member 7
Tissue enriched
Detected in some
liver:
39.0
SEC23B
ENSSSCG00000007097
ENSG00000101310
Protein transport protein Sec23B
Low tissue specificity
Detected in all
SEC24D
ENSSSCG00000009112
ENSG00000150961
SEC24 homolog D, COPII coat complex component
Low tissue specificity
Detected in all
SEC63
ENSSSCG00000004382
ENSG00000025796
SEC63 homolog, protein translocation regulator
Low tissue specificity
Detected in all
SEMA3E
ENSSSCG00000015399
ENSG00000170381
Semaphorin 3E
Tissue enhanced
Detected in many
choroid plexus:
35.4
SERPINB7
ENSSSCG00000004891
ENSG00000166396
Serpin family B member 7
Low tissue specificity
Detected in all
SERPINB8
ENSSSCG00000004888
ENSG00000166401
Serpin family B member 8
Tissue enhanced
Detected in many
adrenal gland:
32.7
ovary:
18.3
SERPINF1
ENSSSCG00000017818
ENSG00000132386
Pigment epithelium-derived factor precursor
Tissue enhanced
Detected in many
dura mater:
113.5
liver:
131.6
SERPINH1
ENSSSCG00000039468
ENSG00000149257
Serpin H1 precursor
Tissue enhanced
Detected in all
ovary:
137.3
SETBP1
ENSSSCG00000004490
ENSG00000152217
SET binding protein 1
Low tissue specificity
Detected in all
SH3PXD2B
ENSSSCG00000027378
ENSG00000174705
SH3 and PX domains 2B
Low tissue specificity
Detected in all
SHH
ENSSSCG00000016416
ENSG00000164690
Sonic hedgehog protein preproprotein
Group enriched
Detected in some
epididymis:
13.3
stomach:
31.7
urinary bladder:
33.0
SHOC2
ENSSSCG00000010628
ENSG00000108061
SHOC2, leucine rich repeat scaffold protein
Low tissue specificity
Detected in all
SHROOM4
ENSSSCG00000012309
ENSG00000158352
Shroom family member 4
Low tissue specificity
Detected in many
SIX1
ENSSSCG00000005087
ENSG00000126778
Homeobox protein SIX1
Tissue enhanced
Detected in many
pituitary gland:
39.5
salivary gland:
31.6
skeletal muscle:
47.3
SIX3
ENSSSCG00000039283
ENSG00000138083
SIX homeobox 3
Group enriched
Detected in some
brain:
16.8
lens:
51.1
pituitary gland:
42.1
retina:
28.4
upper respiratory system:
33.6
SIX5
ENSSSCG00000035791
ENSG00000177045
SIX homeobox 5
Low tissue specificity
Detected in many
SIX6
ENSSSCG00000005086
ENSG00000184302
SIX homeobox 6
Group enriched
Detected in some
pituitary gland:
27.9
retina:
15.9
thyroid gland:
36.8
SKI
ENSSSCG00000040944
ENSG00000157933
SKI proto-oncogene
Low tissue specificity
Detected in all
SLC17A9
ENSSSCG00000040931
ENSG00000101194
Solute carrier family 17 member 9
Tissue enhanced
Detected in many
male glands:
40.3
stomach:
33.0
SLC1A4
ENSSSCG00000028282
ENSG00000115902
Solute carrier family 1 member 4
Tissue enhanced
Detected in many
lens:
49.8
skin:
26.5
SLC25A19
ENSSSCG00000017208
ENSG00000125454
Mitochondrial thiamine pyrophosphate carrier
Low tissue specificity
Detected in all
SLC26A2
ENSSSCG00000039045
ENSG00000155850
Solute carrier family 26 member 2
Tissue enhanced
Detected in many
cartilage:
51.8
dura mater:
53.7
SLC27A4
ENSSSCG00000005648
ENSG00000167114
Solute carrier family 27 member 4
Low tissue specificity
Detected in all
SLC35A3
ENSSSCG00000006871
ENSG00000117620
UDP-N-acetylglucosamine transporter
Tissue enhanced
Detected in all
male glands:
43.8
SLC35D1
ENSSSCG00000032043
ENSG00000116704
Solute carrier family 35 member D1
Tissue enhanced
Detected in all
large intestine:
33.3
liver:
26.4
SLC39A13
ENSSSCG00000013238
ENSG00000165915
Solute carrier family 39 member 13
Low tissue specificity
Detected in all
SLC9A6
ENSSSCG00000012698
ENSG00000198689
Solute carrier family 9 member A6
Tissue enhanced
Detected in all
brain:
28.0
SLITRK6
ENSSSCG00000009486
ENSG00000184564
SLIT and NTRK like family member 6
Tissue enhanced
Detected in many
salivary gland:
36.9
SMAD4
ENSSSCG00000004524
ENSG00000141646
Mothers against decapentaplegic homolog 4
Low tissue specificity
Detected in all
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