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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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310 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
NKX2-6
ENSSSCG00000028064
ENSG00000180053
NK2 homeobox 6
Tissue enhanced
Detected in single
vagus nerve:
1.3
NOTCH3
ENSSSCG00000025176
ENSG00000074181
Notch 3
Low tissue specificity
Detected in all
NPPA
ENSSSCG00000003430
ENSG00000175206
Natriuretic peptides A precursor
Tissue enriched
Detected in some
heart:
932.9
NR3C2
ENSSSCG00000037766
ENSG00000151623
Nuclear receptor subfamily 3 group C member 2
Low tissue specificity
Detected in all
NT5E
ENSSSCG00000004291
ENSG00000135318
5'-nucleotidase ecto
Tissue enhanced
Detected in all
cartilage:
55.2
synovial tissue:
34.8
NUP155
ENSSSCG00000016845
ENSG00000113569
Nucleoporin 155
Tissue enhanced
Detected in all
testis:
45.0
P2RY12
ENSSSCG00000011713
ENSG00000169313
P2Y purinoceptor 12
Tissue enhanced
Detected in many
brain:
35.2
pineal gland:
16.4
PALB2
ENSSSCG00000010794
ENSG00000083093
Partner and localizer of BRCA2
Low tissue specificity
Detected in all
PDCD10
ENSSSCG00000011739
ENSG00000114209
Programmed cell death protein 10
Low tissue specificity
Detected in all
PGK1
ENSSSCG00000012440
ENSG00000102144
Phosphoglycerate kinase 1
Tissue enhanced
Detected in all
skeletal muscle:
116.8
PIEZO1
ENSSSCG00000035230
ENSG00000103335
Piezo type mechanosensitive ion channel component 1
Low tissue specificity
Detected in many
PIGA
ENSSSCG00000012134
ENSG00000165195
Phosphatidylinositol glycan anchor biosynthesis class A
Low tissue specificity
Detected in all
PKLR
ENSSSCG00000026149
ENSG00000143627
Pyruvate kinase L/R
Tissue enriched
Detected in some
liver:
53.5
PKP2
ENSSSCG00000000528
ENSG00000057294
Plakophilin 2
Tissue enhanced
Detected in all
heart:
57.1
PLG
ENSSSCG00000004038
ENSG00000122194
Plasminogen precursor
Tissue enriched
Detected in some
liver:
236.1
PLN
ENSSSCG00000034163
ENSG00000198523
Cardiac phospholamban
Tissue enhanced
Detected in many
heart:
807.9
skeletal muscle:
233.5
PRDM16
ENSSSCG00000021490
ENSG00000142611
PR/SET domain 16
Tissue enhanced
Detected in many
lymphoid tissue:
33.7
PRDM6
ENSSSCG00000014238
ENSG00000061455
PR/SET domain 6
Tissue enhanced
Detected in many
cervix:
23.2
smooth muscle:
34.7
urinary bladder:
29.3
PRKAG2
ENSSSCG00000016432
ENSG00000106617
Protein kinase AMP-activated non-catalytic subunit gamma 2
Low tissue specificity
Detected in all
PRKG1
ENSSSCG00000010429
ENSG00000185532
CGMP-dependent protein kinase 1
Tissue enhanced
Detected in all
smooth muscle:
48.6
PROC
ENSSSCG00000023693
ENSG00000115718
Vitamin K-dependent protein C precursor
Tissue enriched
Detected in some
liver:
156.9
PROS1
ENSSSCG00000025463
ENSG00000184500
Protein S
Tissue enhanced
Detected in all
choroid plexus:
61.8
liver:
44.4
PSEN1
ENSSSCG00000002340
ENSG00000080815
Presenilin-1
Low tissue specificity
Detected in all
PSEN2
ENSSSCG00000010860
ENSG00000143801
Presenilin-2 Presenilin-2 NTF subunit Presenilin-2 CTF subunit
Tissue enhanced
Detected in all
liver:
64.7
PTPN22
ENSSSCG00000006764
ENSG00000134242
Protein tyrosine phosphatase, non-receptor type 22
Tissue enhanced
Detected in many
large intestine:
13.3
lymphoid tissue:
29.9
RAD51C
ENSSSCG00000023955
ENSG00000108384
RAD51 paralog C
Low tissue specificity
Detected in all
RASA1
ENSSSCG00000014146
ENSG00000145715
RAS p21 protein activator 1
Low tissue specificity
Detected in all
RASGRP2
ENSSSCG00000013023
ENSG00000068831
RAS guanyl-releasing protein 2
Tissue enhanced
Detected in many
lymphoid tissue:
48.8
RBM20
ENSSSCG00000010626
ENSG00000203867
RNA binding motif protein 20
Tissue enriched
Detected in some
heart:
47.3
RFWD3
ENSSSCG00000002715
ENSG00000168411
Ring finger and WD repeat domain 3
Low tissue specificity
Detected in all
RHAG
ENSSSCG00000001735
ENSG00000112077
Rh associated glycoprotein
Tissue enhanced
Detected in many
dura mater:
12.9
large intestine:
8.7
small intestine:
19.5
stomach:
10.6
RNF213
ENSSSCG00000017146
ENSG00000173821
Ring finger protein 213
Tissue enhanced
Detected in all
stomach:
106.0
RPL11
ENSSSCG00000024260
ENSG00000142676
60S ribosomal protein L11
Tissue enhanced
Detected in all
lens:
391.3
RPS17
ENSSSCG00000027358
ENSG00000182774
40S ribosomal protein S17
Tissue enhanced
Detected in all
male glands:
385.4
RPS28
ENSSSCG00000013597
ENSG00000233927
40S ribosomal protein S28
Low tissue specificity
Detected in all
RPS29
ENSSSCG00000038507
ENSG00000213741
Ribosomal protein S29
Tissue enhanced
Detected in all
lens:
291.8
RUNX1
ENSSSCG00000035537
ENSG00000159216
Runt-related transcription factor 1
Low tissue specificity
Detected in many
RYR2
ENSSSCG00000010142
ENSG00000198626
Ryanodine receptor 2
Tissue enriched
Detected in many
heart:
143.0
SCN1B
ENSSSCG00000023267
ENSG00000105711
Sodium voltage-gated channel beta subunit 1
Group enriched
Detected in many
brain:
99.0
skeletal muscle:
52.5
SCN2B
ENSSSCG00000021651
ENSG00000149575
Sodium voltage-gated channel beta subunit 2
Tissue enriched
Detected in some
brain:
47.5
SCN3B
ENSSSCG00000024299
ENSG00000166257
Sodium voltage-gated channel beta subunit 3
Tissue enriched
Detected in some
brain:
78.9
SCN4B
ENSSSCG00000029199
ENSG00000177098
Sodium voltage-gated channel beta subunit 4
Tissue enhanced
Detected in many
brain:
61.8
skeletal muscle:
37.7
SCN5A
ENSSSCG00000011259
ENSG00000183873
Sodium voltage-gated channel alpha subunit 5
Tissue enriched
Detected in some
heart:
45.8
SCN9A
ENSSSCG00000015913
ENSG00000169432
Sodium voltage-gated channel alpha subunit 9
Tissue enhanced
Detected in many
brain:
19.2
pituitary gland:
17.5
SCNN1B
ENSSSCG00000028923
ENSG00000168447
Sodium channel epithelial 1 beta subunit
Tissue enhanced
Detected in many
kidney:
24.3
stomach:
38.0
SCNN1G
ENSSSCG00000007836
ENSG00000166828
Sodium channel epithelial 1 gamma subunit
Tissue enhanced
Detected in all
kidney:
30.7
stomach:
28.0
SDHA
ENSSSCG00000020686
ENSG00000073578
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
Tissue enhanced
Detected in all
skeletal muscle:
87.7
SEC23B
ENSSSCG00000007097
ENSG00000101310
Protein transport protein Sec23B
Low tissue specificity
Detected in all
SERPINC1
ENSSSCG00000015493
ENSG00000117601
Antithrombin-III precursor
Tissue enriched
Detected in some
liver:
265.5
SERPIND1
ENSSSCG00000010093
ENSG00000099937
Serpin family D member 1
Tissue enriched
Detected in some
liver:
171.8
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