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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Biological process
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
15
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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310 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SERPINE1
ENSSSCG00000025698
ENSG00000106366
Plasminogen activator inhibitor 1 precursor
Tissue enriched
Detected in many
ovary:
397.7
SERPINF2
ENSSSCG00000038745
ENSG00000167711
Serpin family F member 2
Tissue enhanced
Detected in some
epididymis:
54.3
kidney:
24.5
liver:
126.1
SERPING1
ENSSSCG00000013181
ENSG00000149131
Plasma protease C1 inhibitor precursor
Tissue enhanced
Detected in all
liver:
234.9
SF3B1
ENSSSCG00000016075
ENSG00000115524
Splicing factor 3b subunit 1
Low tissue specificity
Detected in all
SGO1
ENSSSCG00000011207
ENSG00000129810
Shugoshin 1
Tissue enhanced
Detected in many
lymphoid tissue:
23.9
SLA-DQB1
ENSSSCG00000001457
ENSG00000179344,ENSG00000232629
SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
129.0
SLC11A2
ENSSSCG00000034039
ENSG00000110911
Natural resistance-associated macrophage protein 2
Tissue enhanced
Detected in all
upper respiratory system:
51.1
SLC19A2
ENSSSCG00000006290
ENSG00000117479
Thiamine transporter 1
Low tissue specificity
Detected in all
SLC25A38
ENSSSCG00000029708
ENSG00000144659
Solute carrier family 25 member 38
Low tissue specificity
Detected in all
SLC2A10
ENSSSCG00000007451
ENSG00000197496
Solute carrier family 2 member 10
Low tissue specificity
Detected in all
SLC30A10
ENSSSCG00000039095
ENSG00000196660
Solute carrier family 30 member 10
Group enriched
Detected in some
brain:
7.6
large intestine:
20.0
liver:
23.8
small intestine:
20.4
SLC46A1
ENSSSCG00000023478
ENSG00000076351
Solute carrier family 46, member 1
Tissue enhanced
Detected in all
kidney:
37.1
SLC4A1
ENSSSCG00000017358
ENSG00000004939
Solute carrier family 4 member 1 (Diego blood group)
Low tissue specificity
Detected in all
SLC6A2
ENSSSCG00000002827
ENSG00000103546
Solute carrier family 6 member 2
Tissue enhanced
Detected in many
brain:
20.9
epididymis:
20.1
lung:
11.6
male glands:
23.6
SLFN14
ENSSSCG00000031114
ENSG00000236320
Schlafen family member 14
Low tissue specificity
Detected in all
SLX4
ENSSSCG00000007954
ENSG00000188827
SLX4 structure-specific endonuclease subunit
Tissue enhanced
Detected in all
testis:
33.2
SMAD3
ENSSSCG00000004952
ENSG00000166949
Mothers against decapentaplegic homolog 3
Low tissue specificity
Detected in all
SMAD4
ENSSSCG00000004524
ENSG00000141646
Mothers against decapentaplegic homolog 4
Low tissue specificity
Detected in all
SMAD9
ENSSSCG00000009357
ENSG00000120693
Mothers against decapentaplegic homolog 9
Low tissue specificity
Detected in many
SPTA1
ENSSSCG00000006431
ENSG00000163554
Spectrin alpha, erythrocytic 1
Tissue enriched
Detected in some
dura mater:
19.4
SPTB
ENSSSCG00000002277
ENSG00000070182
Spectrin beta, erythrocytic
Tissue enhanced
Detected in many
heart:
28.4
pineal gland:
64.4
skeletal muscle:
43.1
SRC
ENSSSCG00000007334
ENSG00000197122
SRC proto-oncogene, non-receptor tyrosine kinase
Low tissue specificity
Detected in all
SRSF2
ENSSSCG00000036592
ENSG00000161547
Serine/arginine-rich splicing factor 2
Low tissue specificity
Detected in all
TAZ
ENSSSCG00000039655
ENSG00000102125
Tafazzin
Low tissue specificity
Detected in all
TBX1
ENSSSCG00000037762
ENSG00000184058
T-box 1
Tissue enhanced
Detected in many
mouth:
31.0
skin:
39.2
TBX20
ENSSSCG00000016662
ENSG00000164532
T-box 20
Tissue enriched
Detected in some
heart:
66.9
TBXA2R
ENSSSCG00000033759
ENSG00000006638
Thromboxane A2 receptor
Tissue enriched
Detected in many
lymphoid tissue:
48.8
TBXAS1
ENSSSCG00000016504
ENSG00000059377
Thromboxane-A synthase
Low tissue specificity
Detected in many
TCAP
ENSSSCG00000017500
ENSG00000173991
Telethonin
Tissue enhanced
Detected in some
heart:
177.0
male glands:
53.1
skeletal muscle:
200.9
TECRL
ENSSSCG00000024681
ENSG00000205678
Trans-2,3-enoyl-CoA reductase like
Group enriched
Detected in many
heart:
64.8
skeletal muscle:
21.9
TERT
ENSSSCG00000017118
ENSG00000164362
Telomerase reverse transcriptase
Tissue enhanced
Detected in many
small intestine:
13.6
stomach:
14.5
TET2
ENSSSCG00000009157
ENSG00000168769
Tet methylcytosine dioxygenase 2
Low tissue specificity
Detected in all
TF
ENSSSCG00000011640
ENSG00000091513
Serotransferrin precursor
Group enriched
Detected in some
brain:
181.5
liver:
347.8
TFAP2B
ENSSSCG00000025535
ENSG00000008196
Transcription factor AP-2-beta
Group enriched
Detected in many
breast:
49.4
epididymis:
82.5
TGFB2
ENSSSCG00000010816
ENSG00000092969
Transforming growth factor beta 2
Tissue enhanced
Detected in all
choroid plexus:
100.6
TGFB3
ENSSSCG00000002385
ENSG00000119699
Transforming growth factor beta-3 precursor
Tissue enhanced
Detected in many
cartilage:
37.8
penis:
51.2
TGFBR1
ENSSSCG00000005382
ENSG00000106799
TGF-beta receptor type-1 precursor
Low tissue specificity
Detected in all
TGFBR2
ENSSSCG00000011226
ENSG00000163513
Transforming growth factor beta receptor 2
Tissue enhanced
Detected in many
cartilage:
107.0
THBD
ENSSSCG00000007115
ENSG00000178726
Thrombomodulin precursor
Tissue enhanced
Detected in many
mesothelial tissue:
74.0
TLL1
ENSSSCG00000008853
ENSG00000038295
Tolloid like 1
Tissue enhanced
Detected in many
brain:
53.6
synovial tissue:
21.0
TMEM43
ENSSSCG00000011603
ENSG00000170876
Transmembrane protein 43
Low tissue specificity
Detected in all
TMPO
ENSSSCG00000038487
ENSG00000120802
Thymopoietin
Tissue enhanced
Detected in all
lymphoid tissue:
61.1
TMPRSS6
ENSSSCG00000026067
ENSG00000187045
Transmembrane serine protease 6
Tissue enriched
Detected in some
liver:
64.8
TNNC1
ENSSSCG00000011441
ENSG00000114854
Troponin C, slow skeletal and cardiac muscles
Group enriched
Detected in some
heart:
332.4
skeletal muscle:
388.6
TNNI3
ENSSSCG00000024505
ENSG00000129991
Troponin I, cardiac muscle
Tissue enriched
Detected in some
heart:
453.3
TNNT2
ENSSSCG00000023031
ENSG00000118194
Troponin T, cardiac muscle isoform 6
Tissue enriched
Detected in some
heart:
578.7
TP53
ENSSSCG00000017950
ENSG00000141510
Cellular tumor antigen p53
Low tissue specificity
Detected in all
TPI1
ENSSSCG00000000685
ENSG00000111669
Triosephosphate isomerase
Tissue enhanced
Detected in all
lens:
150.6
skeletal muscle:
254.6
TPM1
ENSSSCG00000004570
ENSG00000140416
Tropomyosin alpha-1 chain
Tissue enhanced
Detected in all
skeletal muscle:
406.8
smooth muscle:
225.2
TRPM4
ENSSSCG00000022672
ENSG00000130529
Transient receptor potential cation channel subfamily M member 4
Tissue enhanced
Detected in many
stomach:
82.0
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