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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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310 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MFAP5
ENSSSCG00000031712
ENSG00000197614
Microfibrillar-associated protein 5 precursor
Low tissue specificity
Detected in all
MIB1
ENSSSCG00000025478
ENSG00000101752
Mindbomb E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
MMP3
ENSSSCG00000014985
ENSG00000149968
Interstitial collagenase 18 kDa interstitial collagenase
Tissue enhanced
Detected in many
small intestine:
36.8
upper respiratory system:
34.7
urinary bladder:
43.0
MPL
ENSSSCG00000030906
ENSG00000117400
MPL proto-oncogene, thrombopoietin receptor
Tissue enhanced
Detected in many
testis:
23.8
MYBPC3
ENSSSCG00000013236
ENSG00000134571
Myosin binding protein C, cardiac
Tissue enriched
Detected in some
heart:
207.4
MYH11
ENSSSCG00000000146
ENSG00000133392
Myosin heavy chain 11
Tissue enhanced
Detected in many
ductus deferens:
178.9
smooth muscle:
565.6
urinary bladder:
187.5
MYH7
ENSSSCG00000002029
ENSG00000197616
Myosin-7
Group enriched
Detected in some
heart:
575.2
skeletal muscle:
287.0
MYH9
ENSSSCG00000000145
ENSG00000100345
Myosin heavy chain 9
Low tissue specificity
Detected in all
MYL2
ENSSSCG00000039710
ENSG00000111245
Myosin regulatory light chain 2, ventricular/cardiac muscle isoform
Group enriched
Detected in some
heart:
241.0
skeletal muscle:
174.8
MYL3
ENSSSCG00000011325
ENSG00000160808
Myosin light chain 3
Group enriched
Detected in some
heart:
596.1
skeletal muscle:
418.9
MYL4
ENSSSCG00000017307
ENSG00000198336
Myosin light chain 4
Tissue enriched
Detected in some
heart:
466.8
MYLK
ENSSSCG00000011867
ENSG00000065534
Myosin light chain kinase
Tissue enhanced
Detected in many
ductus deferens:
164.5
endometrium:
133.8
smooth muscle:
313.8
na
ENSSSCG00000001456
ENSG00000196735
SLA class II histocompatibility antigen, DQ haplotype D alpha chain precursor
Tissue enhanced
Detected in many
lymphoid tissue:
163.6
na
ENSSSCG00000001546
ENSG00000112039
Low tissue specificity
Detected in all
na
ENSSSCG00000003768
ENSG00000162614
Tissue enhanced
Detected in many
heart:
61.0
skeletal muscle:
66.8
smooth muscle:
63.0
na
ENSSSCG00000004766
ENSG00000051180,ENSG00000285396
DNA repair protein RAD51 homolog 1
Low tissue specificity
Detected in all
na
ENSSSCG00000005735
ENSG00000165699
Tissue enhanced
Detected in many
testis:
22.5
na
ENSSSCG00000007264
ENSG00000101400
Tissue enhanced
Detected in all
heart:
38.4
skeletal muscle:
42.7
na
ENSSSCG00000007978
ENSG00000188536,ENSG00000206172
Tissue enriched
Detected in many
dura mater:
1041.8
na
ENSSSCG00000009138
ENSG00000205403,ENSG00000285330
Tissue enhanced
Detected in many
liver:
109.6
small intestine:
45.6
na
ENSSSCG00000010703
ENSG00000166033
Tissue enhanced
Detected in all
lens:
171.5
na
ENSSSCG00000010893
ENSG00000000971
Complement factor H precursor
Tissue enhanced
Detected in many
liver:
146.5
synovial tissue:
73.4
na
ENSSSCG00000011068
ENSG00000107890
Low tissue specificity
Detected in all
na
ENSSSCG00000011567
ENSG00000134086
Low tissue specificity
Detected in all
na
ENSSSCG00000012049
ENSG00000180509,ENSG00000276289
Group enriched
Detected in many
ductus deferens:
18.2
heart:
53.0
ovary:
16.4
small intestine:
35.1
na
ENSSSCG00000013928
ENSG00000130283,ENSG00000223802
Tissue enhanced
Detected in many
brain:
43.4
vagus nerve:
18.8
na
ENSSSCG00000014387
ENSG00000131504
Low tissue specificity
Detected in all
na
ENSSSCG00000014792
ENSG00000167323
Stromal interaction molecule 1 precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000014910
ENSG00000182899
Tissue enhanced
Detected in many
liver:
11.1
mesothelial tissue:
10.5
na
ENSSSCG00000015405
ENSG00000135218
Platelet glycoprotein 4
Tissue enhanced
Detected in many
adipose tissue:
146.7
aorta:
64.1
heart:
72.5
skeletal muscle:
63.1
na
ENSSSCG00000016393
ENSG00000136698,ENSG00000152093
Tissue enhanced
Detected in some
brain:
7.6
lymphoid tissue:
4.0
pineal gland:
4.6
testis:
3.5
na
ENSSSCG00000017063
ENSG00000170624
Delta-sarcoglycan
Low tissue specificity
Detected in many
na
ENSSSCG00000021325
ENSG00000180398
Low tissue specificity
Detected in all
na
ENSSSCG00000021656
ENSG00000160145
Low tissue specificity
Detected in all
na
ENSSSCG00000022912
ENSG00000122643
Low tissue specificity
Detected in all
na
ENSSSCG00000023264
ENSG00000138413
Tissue enhanced
Detected in all
large intestine:
54.1
na
ENSSSCG00000024914
ENSG00000243649
Complement factor B precursor
Tissue enhanced
Detected in many
liver:
148.2
small intestine:
99.1
na
ENSSSCG00000026365
ENSG00000088053
Tissue enhanced
Detected in some
bone marrow:
8.1
dura mater:
4.6
na
ENSSSCG00000027613
ENSG00000186439
Tissue enriched
Detected in some
skeletal muscle:
203.4
na
ENSSSCG00000030283
ENSG00000169249
Tissue enriched
Detected in all
cartilage:
45.8
na
ENSSSCG00000031370
ENSG00000164587
Low tissue specificity
Detected in all
na
ENSSSCG00000031563
ENSG00000160882,ENSG00000179142
Tissue enriched
Detected in some
adrenal gland:
437.0
na
ENSSSCG00000032653
ENSG00000088926
Tissue enriched
Detected in many
liver:
61.1
na
ENSSSCG00000033299
ENSG00000196924
Tissue enhanced
Detected in many
smooth muscle:
320.4
na
ENSSSCG00000033503
ENSG00000105372
Tissue enhanced
Detected in some
adrenal gland:
12.0
brain:
16.6
cervix:
16.5
retina:
9.9
na
ENSSSCG00000036976
ENSG00000122367
Group enriched
Detected in many
heart:
79.0
skeletal muscle:
151.8
na
ENSSSCG00000040109
ENSG00000116783,ENSG00000259030
Tissue enriched
Detected in some
heart:
64.1
na
ENSSSCG00000040958
ENSG00000213281
Low tissue specificity
Detected in all
NBEAL2
ENSSSCG00000011330
ENSG00000160796
Neurobeachin like 2
Tissue enhanced
Detected in many
stomach:
75.0
NKX2-5
ENSSSCG00000036285
ENSG00000183072
NK2 homeobox 5
Tissue enriched
Detected in some
heart:
34.6
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