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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
Pig brain category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
Respiratory diseases
Skin diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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218 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
KMT2A
ENSSSCG00000023324
ENSG00000118058
Lysine methyltransferase 2A
Low tissue specificity
Detected in all
KMT2C
ENSSSCG00000020663
ENSG00000055609
Lysine methyltransferase 2C
Low tissue specificity
Detected in all
KRAS
ENSSSCG00000026969
ENSG00000133703
KRAS proto-oncogene, GTPase
Low tissue specificity
Detected in all
LMO2
ENSSSCG00000013307
ENSG00000135363
LIM domain only 2
Low tissue specificity
Detected in many
LRP6
ENSSSCG00000000625
ENSG00000070018
LDL receptor related protein 6
Low tissue specificity
Detected in all
LYL1
ENSSSCG00000024549
ENSG00000104903
LYL1, basic helix-loop-helix family member
Tissue enhanced
Detected in many
lymphoid tissue:
59.9
MAF
ENSSSCG00000040607
ENSG00000178573
MAF bZIP transcription factor
Tissue enhanced
Detected in all
lens:
134.2
MAML2
ENSSSCG00000034879
ENSG00000184384
Mastermind like transcriptional coactivator 2
Low tissue specificity
Detected in all
MAP2K1
ENSSSCG00000004943
ENSG00000169032
Dual specificity mitogen-activated protein kinase kinase 1
Tissue enhanced
Detected in all
brain:
54.6
MAP2K2
ENSSSCG00000027127
ENSG00000126934,ENSG00000230626
Dual specificity mitogen-activated protein kinase kinase 2
Low tissue specificity
Detected in all
MAX
ENSSSCG00000037267
ENSG00000125952
MYC associated factor X
Low tissue specificity
Detected in all
MC2R
ENSSSCG00000039227
ENSG00000185231
Adrenocorticotropic hormone receptor
Tissue enriched
Detected in some
adrenal gland:
59.6
MDM2
ENSSSCG00000000488
ENSG00000135679
E3 ubiquitin-protein ligase Mdm2
Low tissue specificity
Detected in all
MDM4
ENSSSCG00000015284
ENSG00000198625
MDM4, p53 regulator
Low tissue specificity
Detected in all
MECOM
ENSSSCG00000011743
ENSG00000085276
MDS1 and EVI1 complex locus
Tissue enhanced
Detected in many
thyroid gland:
67.1
MEF2B
ENSSSCG00000030351
ENSG00000213999
Myocyte enhancer factor 2B
Low tissue specificity
Detected in all
MEN1
ENSSSCG00000013019
ENSG00000133895
Menin 1
Low tissue specificity
Detected in all
MET
ENSSSCG00000024351
ENSG00000105976
Hepatocyte growth factor receptor
Tissue enhanced
Detected in many
thyroid gland:
33.5
MITF
ENSSSCG00000011514
ENSG00000187098
Sus scrofa microphthalmia-associated transcription factor-like (LOC102167244), mRNA.
Tissue enhanced
Detected in all
cervix:
72.5
MLH1
ENSSSCG00000024222
ENSG00000076242
DNA mismatch repair protein Mlh1
Low tissue specificity
Detected in all
MLLT10
ENSSSCG00000011085
ENSG00000078403
MLLT10, histone lysine methyltransferase DOT1L cofactor
Low tissue specificity
Detected in all
MMP2
ENSSSCG00000002829
ENSG00000087245
72 kDa type IV collagenase precursor
Tissue enhanced
Detected in all
cervix:
147.1
MMP9
ENSSSCG00000007436
ENSG00000100985
Matrix metalloproteinase-9 precursor
Tissue enriched
Detected in many
dura mater:
85.1
MPL
ENSSSCG00000030906
ENSG00000117400
MPL proto-oncogene, thrombopoietin receptor
Tissue enhanced
Detected in many
testis:
23.8
MSH2
ENSSSCG00000008428
ENSG00000095002
DNA mismatch repair protein Msh2
Low tissue specificity
Detected in all
MSH3
ENSSSCG00000014126
ENSG00000113318
MutS homolog 3
Low tissue specificity
Detected in all
MSH6
ENSSSCG00000020931
ENSG00000116062
MutS homolog 6
Low tissue specificity
Detected in all
MYB
ENSSSCG00000004167
ENSG00000118513
MYB proto-oncogene, transcription factor
Tissue enriched
Detected in many
lymphoid tissue:
99.9
MYC
ENSSSCG00000005965
ENSG00000136997
Myc proto-oncogene protein
Tissue enhanced
Detected in many
mesothelial tissue:
87.7
MYCN
ENSSSCG00000008618
ENSG00000134323
MYCN proto-oncogene, bHLH transcription factor
Tissue enhanced
Detected in all
skin:
26.8
MYD88
ENSSSCG00000011251
ENSG00000172936
Myeloid differentiation primary response protein MyD88
Low tissue specificity
Detected in many
na
ENSSSCG00000000191
ENSG00000167548
Low tissue specificity
Detected in all
na
ENSSSCG00000002855
ENSG00000105173
Tissue enhanced
Detected in all
testis:
21.0
na
ENSSSCG00000011081
ENSG00000168283,ENSG00000269897
Polycomb complex protein BMI-1
Low tissue specificity
Detected in all
na
ENSSSCG00000011567
ENSG00000134086
Low tissue specificity
Detected in all
na
ENSSSCG00000023264
ENSG00000138413
Tissue enhanced
Detected in all
large intestine:
54.1
na
ENSSSCG00000030283
ENSG00000169249
Tissue enriched
Detected in all
cartilage:
45.8
na
ENSSSCG00000030318
ENSG00000143252
Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
Low tissue specificity
Detected in all
na
ENSSSCG00000030560
ENSG00000140443
Insulin-like growth factor 1 receptor precursor
Low tissue specificity
Detected in all
na
ENSSSCG00000035293
ENSG00000167244
Insulin-like growth factor II Insulin-like growth factor II Preptin
Tissue enhanced
Detected in many
aorta:
166.6
mesothelial tissue:
215.3
na
ENSSSCG00000037145
ENSG00000171862
Tissue enriched
Detected in single
testis:
15.9
na
ENSSSCG00000038715
ENSG00000154803
Low tissue specificity
Detected in all
na
ENSSSCG00000039037
ENSG00000165588
Tissue enhanced
Detected in many
testis:
10.3
na
ENSSSCG00000039139
ENSG00000142208
RAC-alpha serine/threonine-protein kinase
Low tissue specificity
Detected in all
na
ENSSSCG00000039633
ENSG00000205755
Low tissue specificity
Detected in many
na
ENSSSCG00000040461
ENSG00000129757
Low tissue specificity
Detected in many
na
ENSSSCG00000040958
ENSG00000213281
Low tissue specificity
Detected in all
NAV3
ENSSSCG00000029249
ENSG00000067798
Neuron navigator 3
Tissue enhanced
Detected in many
brain:
28.0
NCOA4
ENSSSCG00000010399
ENSG00000266412
Nuclear receptor coactivator 4
Tissue enriched
Detected in all
male glands:
156.0
NF1
ENSSSCG00000017748
ENSG00000196712
Neurofibromin 1
Low tissue specificity
Detected in all
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