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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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218 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DAPK1
ENSSSCG00000010949
ENSG00000196730
Death associated protein kinase 1
Low tissue specificity
Detected in all
DAXX
ENSSSCG00000001509
ENSG00000204209
Death domain associated protein
Low tissue specificity
Detected in all
DCC
ENSSSCG00000040836
ENSG00000187323
DCC netrin 1 receptor
Tissue enhanced
Detected in some
brain:
20.5
epididymis:
22.8
male glands:
8.5
DDIT3
ENSSSCG00000040751
ENSG00000175197
DNA damage-inducible transcript 3 protein
Low tissue specificity
Detected in all
DNMT3A
ENSSSCG00000029413
ENSG00000119772
DNA (cytosine-5)-methyltransferase 3A
Low tissue specificity
Detected in all
DUSP22
ENSSSCG00000031489
ENSG00000112679
Dual specificity phosphatase 22
Low tissue specificity
Detected in all
EDNRB
ENSSSCG00000009477
ENSG00000136160
Endothelin receptor type B
Tissue enhanced
Detected in many
adrenal gland:
64.1
choroid plexus:
64.7
cornea:
49.8
ovary:
62.6
EGF
ENSSSCG00000009134
ENSG00000138798
Pro-epidermal growth factor precursor
Tissue enhanced
Detected in many
choroid plexus:
46.4
kidney:
90.0
male glands:
52.2
salivary gland:
32.6
EGFR
ENSSSCG00000022126
ENSG00000146648
Epidermal growth factor receptor precursor
Tissue enhanced
Detected in many
male glands:
80.6
ELK4
ENSSSCG00000025182
ENSG00000158711
ELK4, ETS transcription factor
Low tissue specificity
Detected in all
EP300
ENSSSCG00000000068
ENSG00000100393
E1A binding protein p300
Low tissue specificity
Detected in all
EPAS1
ENSSSCG00000008443
ENSG00000116016
Endothelial PAS domain-containing protein 1
Low tissue specificity
Detected in many
ERBB2
ENSSSCG00000017497
ENSG00000141736
Receptor tyrosine-protein kinase erbB-2 precursor
Low tissue specificity
Detected in all
EREG
ENSSSCG00000038185
ENSG00000124882
Epiregulin
Low tissue specificity
Detected in all
ERG
ENSSSCG00000022318
ENSG00000157554
Transcriptional regulator ERG
Tissue enhanced
Detected in many
cartilage:
56.5
ESR1
ENSSSCG00000025777
ENSG00000091831
Estrogen receptor
Group enriched
Detected in many
cervix:
80.7
endometrium:
72.0
fallopian tube:
57.2
ETNK1
ENSSSCG00000039397
ENSG00000139163
Ethanolamine kinase 1
Low tissue specificity
Detected in all
ETV1
ENSSSCG00000024591
ENSG00000006468
ETS variant 1
Tissue enhanced
Detected in many
brain:
74.2
pituitary gland:
52.5
salivary gland:
97.0
ETV4
ENSSSCG00000017379
ENSG00000175832
ETS variant 4
Tissue enhanced
Detected in many
cartilage:
59.6
ETV5
ENSSSCG00000023229
ENSG00000244405
ETS translocation variant 5
Tissue enhanced
Detected in all
cartilage:
36.1
EZH2
ENSSSCG00000028840
ENSG00000106462
Histone-lysine N-methyltransferase EZH2
Tissue enhanced
Detected in all
lymphoid tissue:
51.5
testis:
48.3
FAS
ENSSSCG00000010448
ENSG00000026103
Tumor necrosis factor receptor superfamily member 6 precursor
Low tissue specificity
Detected in all
FEV
ENSSSCG00000035988
ENSG00000163497
FEV, ETS transcription factor
Tissue enhanced
Detected in some
brain:
11.0
lens:
11.7
stomach:
5.4
FGF3
ENSSSCG00000012872
ENSG00000186895
Fibroblast growth factor 3
Tissue enhanced
Detected in some
lymphoid tissue:
4.0
small intestine:
1.7
upper respiratory system:
3.2
FGFR1
ENSSSCG00000015815
ENSG00000077782
Fibroblast growth factor receptor 1
Tissue enhanced
Detected in all
cartilage:
88.1
FGFR2
ENSSSCG00000010698
ENSG00000066468
Fibroblast growth factor receptor 2 precursor
Tissue enhanced
Detected in many
cartilage:
96.5
lens:
85.2
FGFR3
ENSSSCG00000030827
ENSG00000068078
Fibroblast growth factor receptor 3
Tissue enhanced
Detected in many
lens:
40.2
male glands:
41.9
FH
ENSSSCG00000028178
ENSG00000091483
Fumarate hydratase, mitochondrial
Tissue enhanced
Detected in all
skeletal muscle:
54.3
FHIT
ENSSSCG00000035818
ENSG00000189283
Fragile histidine triad
Tissue enhanced
Detected in all
male glands:
36.6
FLI1
ENSSSCG00000015237
ENSG00000151702
Fli-1 proto-oncogene, ETS transcription factor
Low tissue specificity
Detected in many
FLT3
ENSSSCG00000009314
ENSG00000122025
Fms related tyrosine kinase 3
Tissue enhanced
Detected in many
brain:
12.1
large intestine:
8.3
FOXO1
ENSSSCG00000009370
ENSG00000150907
Forkhead box O1
Low tissue specificity
Detected in all
FZD7
ENSSSCG00000016111
ENSG00000155760
Frizzled class receptor 7
Tissue enhanced
Detected in all
choroid plexus:
52.3
GALNT12
ENSSSCG00000005379
ENSG00000119514
Polypeptide N-acetylgalactosaminyltransferase 12
Tissue enhanced
Detected in many
male glands:
101.5
stomach:
29.1
GNA12
ENSSSCG00000032549
ENSG00000146535
G protein subunit alpha 12
Low tissue specificity
Detected in all
GNA13
ENSSSCG00000039336
ENSG00000120063
G protein subunit alpha 13
Low tissue specificity
Detected in all
GNAI2
ENSSSCG00000011399
ENSG00000114353
Guanine nucleotide-binding protein G(i) subunit alpha-2
Tissue enriched
Detected in all
retina:
275.2
GSTP1
ENSSSCG00000032003
ENSG00000084207
Glutathione S-transferase pi 1
Tissue enhanced
Detected in all
lens:
170.7
HGF
ENSSSCG00000015403
ENSG00000019991
Hepatocyte growth factor
Tissue enhanced
Detected in many
liver:
19.6
HIF1A
ENSSSCG00000005096
ENSG00000100644
Hypoxia-inducible factor 1-alpha
Tissue enhanced
Detected in all
cartilage:
106.3
HRAS
ENSSSCG00000031513
ENSG00000174775
HRas proto-oncogene, GTPase
Tissue enhanced
Detected in all
lens:
85.8
IDH2
ENSSSCG00000001852
ENSG00000182054
Isocitrate dehydrogenase
Tissue enhanced
Detected in all
heart:
81.1
skeletal muscle:
120.4
IGF1
ENSSSCG00000000857
ENSG00000017427
Insulin-like growth factor I precursor
Tissue enhanced
Detected in many
adipose tissue:
73.1
JAK2
ENSSSCG00000005215
ENSG00000096968
Tyrosine-protein kinase JAK2
Low tissue specificity
Detected in all
JUNB
ENSSSCG00000013735
ENSG00000171223
JunB proto-oncogene, AP-1 transcription factor subunit
Tissue enhanced
Detected in many
synovial tissue:
110.7
KDM6A
ENSSSCG00000012262
ENSG00000147050
Lysine demethylase 6A
Low tissue specificity
Detected in all
KEAP1
ENSSSCG00000023667
ENSG00000079999
Kelch-like ECH-associated protein 1
Low tissue specificity
Detected in all
KIF14
ENSSSCG00000010912
ENSG00000118193
Kinesin family member 14
Tissue enhanced
Detected in many
lymphoid tissue:
17.3
testis:
19.9
KIT
ENSSSCG00000008842
ENSG00000157404
Mast/stem cell growth factor receptor Kit precursor
Tissue enhanced
Detected in many
bone marrow:
36.7
KLF4
ENSSSCG00000005437
ENSG00000136826
Krueppel-like factor 4
Tissue enhanced
Detected in many
synovial tissue:
84.3
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