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Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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503 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PRDM6
ENSSSCG00000014238
ENSG00000061455
PR/SET domain 6
Tissue enhanced
Detected in many
cervix:
23.2
smooth muscle:
34.7
urinary bladder:
29.3
PRIM2
ENSSSCG00000001493
ENSG00000146143
DNA primase large subunit
Tissue enhanced
Detected in all
kidney:
30.9
PRRT1B
ENSSSCG00000031465
ENSG00000283526
Proline rich transmembrane protein 1B
Tissue enhanced
Detected in all
kidney:
28.2
PTER
ENSSSCG00000022953
ENSG00000165983
Phosphotriesterase-related protein
Tissue enhanced
Detected in all
kidney:
61.1
PTF1A
ENSSSCG00000030662
ENSG00000168267
Pancreas specific transcription factor, 1a
Tissue enhanced
Detected in some
fallopian tube:
2.4
kidney:
1.7
retina:
2.2
PTGER3
ENSSSCG00000003788
ENSG00000050628
Prostaglandin E2 receptor EP3 subtype
Tissue enhanced
Detected in many
cervix:
28.4
heart:
41.4
kidney:
29.8
PTH1R
ENSSSCG00000011326
ENSG00000160801
Parathyroid hormone/parathyroid hormone-related peptide receptor
Tissue enhanced
Detected in many
cartilage:
47.4
kidney:
49.9
PTPRD
ENSSSCG00000005194
ENSG00000153707
Protein tyrosine phosphatase, receptor type D
Tissue enhanced
Detected in many
brain:
50.8
cartilage:
34.8
kidney:
38.0
PTPRQ
ENSSSCG00000031716
ENSG00000139304
Protein tyrosine phosphatase, receptor type Q
Tissue enhanced
Detected in some
choroid plexus:
37.4
kidney:
21.3
mesothelial tissue:
74.0
PYROXD2
ENSSSCG00000010533
ENSG00000119943
Pyridine nucleotide-disulphide oxidoreductase domain 2
Tissue enhanced
Detected in many
kidney:
41.0
RAB11FIP3
ENSSSCG00000035854
ENSG00000090565
RAB11 family interacting protein 3
Tissue enhanced
Detected in all
kidney:
45.8
RAB11FIP5
ENSSSCG00000022162
ENSG00000135631
RAB11 family interacting protein 5
Tissue enhanced
Detected in all
kidney:
42.9
testis:
41.1
RARRES2
ENSSSCG00000035419
ENSG00000106538
Retinoic acid receptor responder protein 2 precursor
Tissue enhanced
Detected in all
kidney:
123.4
liver:
125.8
RBPMS2
ENSSSCG00000004549
ENSG00000166831
RNA binding protein, mRNA processing factor 2
Tissue enhanced
Detected in many
smooth muscle:
91.8
urinary bladder:
45.2
RENBP
ENSSSCG00000012792
ENSG00000102032
N-acylglucosamine 2-epimerase
Tissue enhanced
Detected in all
kidney:
50.4
RGS9BP
ENSSSCG00000021479
ENSG00000186326
Regulator of G protein signaling 9 binding protein
Tissue enhanced
Detected in some
kidney:
13.3
retina:
48.1
RHBG
ENSSSCG00000035121
ENSG00000132677
Ammonium transporter Rh type B
Tissue enhanced
Detected in all
kidney:
41.8
skin:
21.6
RHCG
ENSSSCG00000001841
ENSG00000140519
Ammonium transporter Rh type C
Tissue enhanced
Detected in many
kidney:
19.8
mouth:
44.9
ovary:
27.8
RHOBTB1
ENSSSCG00000028327
ENSG00000072422
Rho related BTB domain containing 1
Tissue enhanced
Detected in all
kidney:
43.5
male glands:
60.1
RHOBTB2
ENSSSCG00000009638
ENSG00000008853
Rho related BTB domain containing 2
Tissue enhanced
Detected in all
kidney:
56.7
RHPN1
ENSSSCG00000006957
ENSG00000158106
Rhophilin Rho GTPase binding protein 1
Tissue enhanced
Detected in many
fallopian tube:
10.7
kidney:
15.2
small intestine:
11.2
upper respiratory system:
12.1
RNF152
ENSSSCG00000004902
ENSG00000176641
E3 ubiquitin-protein ligase RNF152
Tissue enhanced
Detected in many
choroid plexus:
60.0
kidney:
102.9
RNF183
ENSSSCG00000027688
ENSG00000165188
Ring finger protein 183
Tissue enhanced
Detected in many
kidney:
22.7
SALL1
ENSSSCG00000002836
ENSG00000103449
Spalt like transcription factor 1
Tissue enhanced
Detected in many
kidney:
21.5
lens:
43.4
liver:
21.1
pineal gland:
26.1
thyroid gland:
31.4
SCIN
ENSSSCG00000015353
ENSG00000006747
Adseverin
Tissue enhanced
Detected in many
kidney:
43.1
male glands:
34.2
SCN10A
ENSSSCG00000011260
ENSG00000185313
Sodium voltage-gated channel alpha subunit 10
Tissue enhanced
Detected in some
kidney:
3.4
retina:
8.2
testis:
3.5
SCNN1A
ENSSSCG00000000707
ENSG00000111319
Amiloride-sensitive sodium channel subunit alpha
Tissue enhanced
Detected in many
kidney:
33.8
male glands:
40.2
stomach:
37.7
SCNN1B
ENSSSCG00000028923
ENSG00000168447
Sodium channel epithelial 1 beta subunit
Tissue enhanced
Detected in many
kidney:
24.3
stomach:
38.0
SCNN1G
ENSSSCG00000007836
ENSG00000166828
Sodium channel epithelial 1 gamma subunit
Tissue enhanced
Detected in all
kidney:
30.7
stomach:
28.0
SCRN2
ENSSSCG00000017521
ENSG00000141295
Secernin 2
Tissue enhanced
Detected in all
kidney:
55.0
SCTR
ENSSSCG00000029536
ENSG00000080293
Secretin receptor precursor
Tissue enhanced
Detected in some
gallbladder:
16.6
kidney:
12.0
small intestine:
14.6
stomach:
18.7
SERHL2
ENSSSCG00000034350
ENSG00000183569
Serine hydrolase like 2
Tissue enhanced
Detected in all
kidney:
41.1
pineal gland:
38.9
SERINC2
ENSSSCG00000023585
ENSG00000168528
Serine incorporator 2 precursor
Tissue enhanced
Detected in many
kidney:
49.3
stomach:
57.8
SERPINF2
ENSSSCG00000038745
ENSG00000167711
Serpin family F member 2
Tissue enhanced
Detected in some
epididymis:
54.3
kidney:
24.5
liver:
126.1
SFXN2
ENSSSCG00000010589
ENSG00000156398
Sideroflexin 2
Tissue enhanced
Detected in all
kidney:
28.3
male glands:
35.3
SGK2
ENSSSCG00000024325
ENSG00000101049
SGK2, serine/threonine kinase 2
Tissue enhanced
Detected in many
adipose tissue:
85.4
brain:
31.5
kidney:
33.0
SHISAL2A
ENSSSCG00000034127
ENSG00000182183
Shisa like 2A
Tissue enhanced
Detected in many
kidney:
12.5
testis:
44.1
SIM1
ENSSSCG00000004357
ENSG00000112246
Single-minded homolog 1
Tissue enhanced
Detected in some
epididymis:
8.6
kidney:
40.7
male glands:
12.0
SLC13A2
ENSSSCG00000017763
ENSG00000007216
Solute carrier family 13 member 2
Tissue enhanced
Detected in some
gallbladder:
12.9
kidney:
56.9
small intestine:
27.1
SLC14A1
ENSSSCG00000004492
ENSG00000141469
Solute carrier family 14 member 1 (Kidd blood group)
Tissue enhanced
Detected in all
brain:
34.6
kidney:
39.0
SLC16A12
ENSSSCG00000010455
ENSG00000152779
Solute carrier family 16 member 12
Tissue enhanced
Detected in all
kidney:
52.5
liver:
34.1
SLC16A5
ENSSSCG00000017215
ENSG00000170190
Solute carrier family 16 member 5
Tissue enhanced
Detected in many
kidney:
28.9
urinary bladder:
51.7
SLC19A3
ENSSSCG00000021968
ENSG00000135917
Solute carrier family 19 member 3
Tissue enhanced
Detected in many
kidney:
28.0
small intestine:
15.2
SLC1A1
ENSSSCG00000005222
ENSG00000106688
Excitatory amino acid transporter 3
Tissue enhanced
Detected in many
brain:
18.7
kidney:
15.9
small intestine:
30.8
SLC22A18
ENSSSCG00000012855
ENSG00000110628
Solute carrier family 22 member 18
Tissue enhanced
Detected in many
kidney:
18.1
liver:
31.6
SLC22A6
ENSSSCG00000023571
ENSG00000197901
Solute carrier family 22 member 6
Tissue enhanced
Detected in some
brain:
38.9
kidney:
38.9
vagus nerve:
20.4
SLC23A1
ENSSSCG00000026423
ENSG00000170482
Solute carrier family 23 member 1
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
31.0
SLC25A45
ENSSSCG00000012993
ENSG00000162241
Solute carrier family 25 member 45
Tissue enhanced
Detected in some
kidney:
27.2
skeletal muscle:
6.9
SLC26A7
ENSSSCG00000006116
ENSG00000147606
Solute carrier family 26 member 7
Tissue enhanced
Detected in many
kidney:
46.2
male glands:
25.2
thyroid gland:
79.4
SLC27A2
ENSSSCG00000004643
ENSG00000140284
Very long-chain acyl-CoA synthetase
Tissue enhanced
Detected in some
kidney:
21.9
liver:
40.8
retina:
11.2
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