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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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503 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLC27A6
ENSSSCG00000014257
ENSG00000113396
Solute carrier family 27 member 6
Tissue enhanced
Detected in many
choroid plexus:
22.6
kidney:
34.9
SLC3A1
ENSSSCG00000008449
ENSG00000138079
Neutral and basic amino acid transport protein rBAT
Tissue enhanced
Detected in many
gallbladder:
19.4
kidney:
43.3
male glands:
15.4
SLC46A1
ENSSSCG00000023478
ENSG00000076351
Solute carrier family 46, member 1
Tissue enhanced
Detected in all
kidney:
37.1
SLC47A1
ENSSSCG00000033329
ENSG00000142494
Solute carrier family 47 member 1
Tissue enhanced
Detected in all
dura mater:
44.3
kidney:
26.8
SLC4A11
ENSSSCG00000007157
ENSG00000088836
Solute carrier family 4 member 11
Tissue enhanced
Detected in many
cornea:
94.2
kidney:
44.4
SLC4A4
ENSSSCG00000008943
ENSG00000080493
Electrogenic sodium bicarbonate cotransporter 1
Tissue enhanced
Detected in many
brain:
40.8
gallbladder:
56.3
kidney:
58.8
SLC5A3
ENSSSCG00000034167
ENSG00000198743
Solute carrier family 5 member 3
Tissue enhanced
Detected in all
kidney:
63.8
male glands:
116.8
SLC7A4
ENSSSCG00000010102
ENSG00000099960
Cationic amino acid transporter 4
Tissue enhanced
Detected in many
choroid plexus:
25.7
male glands:
15.2
urinary bladder:
26.1
SLC7A7
ENSSSCG00000002041
ENSG00000155465
Y+L amino acid transporter 1
Tissue enhanced
Detected in many
kidney:
72.2
SLC7A8
ENSSSCG00000002032
ENSG00000092068
Solute carrier family 7 member 8
Tissue enhanced
Detected in many
cervix:
45.4
kidney:
72.3
SLC7A9
ENSSSCG00000022948
ENSG00000021488
B(0,+)-type amino acid transporter 1
Tissue enhanced
Detected in all
kidney:
28.4
small intestine:
44.6
SLC9A3R1
ENSSSCG00000017232
ENSG00000109062
Na(+)/H(+) exchange regulatory cofactor NHE-RF1
Tissue enhanced
Detected in many
kidney:
85.7
SLCO4C1
ENSSSCG00000014182
ENSG00000173930
Solute carrier organic anion transporter family member 4C1
Tissue enhanced
Detected in many
kidney:
24.7
salivary gland:
17.0
upper respiratory system:
13.8
SNX8
ENSSSCG00000040977
ENSG00000106266
Sorting nexin 8
Tissue enhanced
Detected in all
kidney:
51.2
SOST
ENSSSCG00000039204
ENSG00000167941
Sclerostin
Tissue enhanced
Detected in some
aorta:
5.3
bone marrow:
6.7
male glands:
4.0
urinary bladder:
6.6
SOWAHA
ENSSSCG00000014286
ENSG00000198944
Sosondowah ankyrin repeat domain family member A
Tissue enhanced
Detected in many
brain:
40.5
kidney:
14.4
SPTSSB
ENSSSCG00000029080
ENSG00000196542
Serine palmitoyltransferase small subunit B
Tissue enhanced
Detected in some
brain:
8.4
large intestine:
13.5
skin:
8.4
stomach:
21.7
urinary bladder:
8.1
STARD8
ENSSSCG00000012828
ENSG00000130052
StAR related lipid transfer domain containing 8
Tissue enhanced
Detected in many
kidney:
39.0
lymphoid tissue:
32.9
STK32B
ENSSSCG00000035020
ENSG00000152953
Serine/threonine kinase 32B
Tissue enhanced
Detected in many
cartilage:
11.3
gallbladder:
15.6
kidney:
14.4
smooth muscle:
13.1
STK32C
ENSSSCG00000010761
ENSG00000165752
Serine/threonine kinase 32C
Tissue enhanced
Detected in some
brain:
24.3
thyroid gland:
6.3
urinary bladder:
9.0
STRA6
ENSSSCG00000001909
ENSG00000137868
Stimulated by retinoic acid 6
Tissue enhanced
Detected in many
kidney:
79.5
lens:
35.1
SULT1C2
ENSSSCG00000022153
ENSG00000198203
Sulfotransferase family 1C member 2
Tissue enhanced
Detected in all
kidney:
34.7
stomach:
54.8
SUSD2
ENSSSCG00000025393
ENSG00000099994
Sushi domain containing 2
Tissue enhanced
Detected in many
kidney:
42.5
TAAR1
ENSSSCG00000035807
ENSG00000146399
Trace amine associated receptor 1
Tissue enhanced
Detected in some
kidney:
12.3
lung:
4.6
stomach:
15.3
TACSTD2
ENSSSCG00000003832
ENSG00000184292
Tumor associated calcium signal transducer 2
Tissue enhanced
Detected in many
cornea:
60.8
upper respiratory system:
52.2
urinary bladder:
76.7
TBX4
ENSSSCG00000022980
ENSG00000121075
T-box transcription factor TBX4
Tissue enhanced
Detected in many
cartilage:
44.1
lung:
21.4
penis:
14.5
urinary bladder:
19.8
TCF21
ENSSSCG00000033258
ENSG00000118526
Transcription factor 21
Tissue enhanced
Detected in many
urinary bladder:
18.7
TFCP2L1
ENSSSCG00000015732
ENSG00000115112
Transcription factor CP2 like 1
Tissue enhanced
Detected in many
kidney:
72.4
salivary gland:
96.6
upper respiratory system:
48.5
TFEC
ENSSSCG00000038138
ENSG00000105967
Transcription factor EC
Tissue enhanced
Detected in many
kidney:
29.7
lymphoid tissue:
40.3
TKFC
ENSSSCG00000013087
ENSG00000149476
Triokinase and FMN cyclase
Tissue enhanced
Detected in all
kidney:
38.7
liver:
42.9
TLCD2
ENSSSCG00000040205
ENSG00000185561
TLC domain containing 2
Tissue enhanced
Detected in all
brain:
20.7
kidney:
19.1
TMEM116
ENSSSCG00000009893
ENSG00000198270
Transmembrane protein 116
Tissue enhanced
Detected in many
kidney:
38.5
lung:
28.8
salivary gland:
23.8
stomach:
18.5
TMEM125
ENSSSCG00000024697
ENSG00000179178
Transmembrane protein 125
Tissue enhanced
Detected in many
brain:
30.3
epididymis:
24.1
kidney:
22.3
male glands:
27.0
TMEM171
ENSSSCG00000014066
ENSG00000157111
Transmembrane protein 171
Tissue enhanced
Detected in some
kidney:
16.0
large intestine:
57.8
lens:
29.1
small intestine:
16.2
TMEM252
ENSSSCG00000037125
ENSG00000181778
Transmembrane protein 252
Tissue enhanced
Detected in all
kidney:
27.6
TMEM72
ENSSSCG00000025787
ENSG00000187783
Transmembrane protein 72
Tissue enhanced
Detected in some
choroid plexus:
65.8
kidney:
38.7
large intestine:
14.1
TP63
ENSSSCG00000025592
ENSG00000073282
Tumor protein p63
Tissue enhanced
Detected in many
mouth:
48.3
skin:
103.2
urinary bladder:
41.9
TRAV36DV7
ENSSSCG00000027788
T cell receptor alpha variable 36/delta variable 7
Tissue enhanced
Detected in some
kidney:
9.3
lymphoid tissue:
13.1
TRIM50
ENSSSCG00000007703
ENSG00000146755
E3 ubiquitin-protein ligase TRIM50
Tissue enhanced
Detected in some
brain:
4.0
kidney:
15.2
skin:
6.7
stomach:
8.7
TRPA1
ENSSSCG00000006186
ENSG00000104321
Transient receptor potential cation channel subfamily A member 1
Tissue enhanced
Detected in many
large intestine:
18.2
urinary bladder:
25.5
TRPM6
ENSSSCG00000005269
ENSG00000119121
Transient receptor potential cation channel subfamily M member 6
Tissue enhanced
Detected in many
kidney:
30.9
TSKU
ENSSSCG00000014871
ENSG00000182704
Tsukushi, small leucine rich proteoglycan
Tissue enhanced
Detected in many
kidney:
62.7
lens:
49.8
ovary:
81.7
TYR
ENSSSCG00000026409
ENSG00000077498
Tyrosinase precursor
Tissue enhanced
Detected in many
kidney:
31.6
testis:
9.3
UNC5D
ENSSSCG00000015830
ENSG00000156687
Unc-5 netrin receptor D
Tissue enhanced
Detected in many
brain:
18.0
kidney:
15.8
UPP2
ENSSSCG00000021938
ENSG00000007001
Uridine phosphorylase 2
Tissue enhanced
Detected in some
kidney:
69.9
liver:
19.3
small intestine:
16.2
VNN1
ENSSSCG00000004181
ENSG00000112299
Pantetheinase precursor
Tissue enhanced
Detected in some
endometrium:
24.8
kidney:
29.9
liver:
39.0
ovary:
18.4
VWDE
ENSSSCG00000022543
ENSG00000146530
Von Willebrand factor D and EGF domains
Tissue enhanced
Detected in some
brain:
6.9
kidney:
12.9
penis:
7.7
pituitary gland:
6.4
smooth muscle:
5.7
WDR72
ENSSSCG00000004615
ENSG00000166415
WD repeat domain 72
Tissue enhanced
Detected in some
choroid plexus:
20.5
kidney:
41.9
WNK4
ENSSSCG00000017387
ENSG00000126562
WNK lysine deficient protein kinase 4
Tissue enhanced
Detected in many
cartilage:
36.2
kidney:
46.7
penis:
29.3
vagus nerve:
36.8
WNT5A
ENSSSCG00000035859
ENSG00000114251
Wnt family member 5A
Tissue enhanced
Detected in many
cornea:
43.9
urinary bladder:
38.3
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