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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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503 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
na
ENSSSCG00000040788
Tissue enhanced
Detected in some
adipose tissue:
2.0
kidney:
5.5
liver:
4.3
na
ENSSSCG00000040844
ENSG00000165202
Tissue enhanced
Detected in some
breast:
3.4
cornea:
4.5
kidney:
4.0
mouth:
6.3
testis:
3.3
na
ENSSSCG00000040901
Tissue enhanced
Detected in some
thyroid gland:
3.7
urinary bladder:
4.1
na
ENSSSCG00000040926
Tissue enhanced
Detected in some
kidney:
2.9
testis:
3.5
na
ENSSSCG00000040960
Tissue enhanced
Detected in many
kidney:
10.3
NAAA
ENSSSCG00000008973
ENSG00000138744
N-acylethanolamine acid amidase
Tissue enhanced
Detected in all
kidney:
54.4
NAPRT
ENSSSCG00000031825
ENSG00000147813
Nicotinate phosphoribosyltransferase
Tissue enhanced
Detected in all
kidney:
50.4
NCCRP1
ENSSSCG00000026407
ENSG00000188505
Non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)
Tissue enhanced
Detected in many
cornea:
45.8
mouth:
50.5
urinary bladder:
41.3
NECTIN1
ENSSSCG00000015125
ENSG00000110400
Nectin-1 precursor
Tissue enhanced
Detected in many
skin:
34.6
urinary bladder:
38.1
NECTIN4
ENSSSCG00000026861
ENSG00000143217
Nectin cell adhesion molecule 4
Tissue enhanced
Detected in many
cornea:
28.9
male glands:
19.1
mouth:
24.0
skin:
19.1
urinary bladder:
17.6
NEIL1
ENSSSCG00000001882
ENSG00000140398
Nei like DNA glycosylase 1
Tissue enhanced
Detected in all
kidney:
36.0
liver:
51.3
NIT1
ENSSSCG00000037793
ENSG00000158793
Nitrilase 1
Tissue enhanced
Detected in all
kidney:
51.0
NOX4
ENSSSCG00000014927
ENSG00000086991
NADPH oxidase 4
Tissue enhanced
Detected in many
kidney:
56.0
lens:
24.9
NOX5
ENSSSCG00000004966
ENSG00000255346
NADPH oxidase 5
Tissue enhanced
Detected in many
mesothelial tissue:
18.5
urinary bladder:
24.4
NRARP
ENSSSCG00000005844
ENSG00000198435
NOTCH regulated ankyrin repeat protein
Tissue enhanced
Detected in all
testis:
90.1
urinary bladder:
83.9
NRK
ENSSSCG00000012546
ENSG00000123572
Nik related kinase
Tissue enhanced
Detected in some
brain:
11.4
cartilage:
51.2
kidney:
16.0
NUPR1
ENSSSCG00000040162
ENSG00000176046
Nuclear protein 1, transcriptional regulator
Tissue enhanced
Detected in many
kidney:
107.6
liver:
104.2
salivary gland:
176.4
OCA2
ENSSSCG00000015854
ENSG00000104044
P protein
Tissue enhanced
Detected in some
brain:
11.7
choroid plexus:
26.8
kidney:
21.6
lens:
17.4
thyroid gland:
16.9
OPRK1
ENSSSCG00000006264
ENSG00000082556
Opioid receptor kappa 1
Tissue enhanced
Detected in many
brain:
17.7
kidney:
16.8
pituitary gland:
15.5
OR1B1
ENSSSCG00000037836
ENSG00000280094
Olfactory receptor family 1 subfamily B member 1 (gene/pseudogene)
Tissue enhanced
Detected in some
breast:
5.6
kidney:
6.1
testis:
3.3
OR51Q1
ENSSSCG00000038108
ENSG00000167360
Olfactory receptor family 51 subfamily Q member 1 (gene/pseudogene)
Tissue enhanced
Detected in some
brain:
8.7
breast:
4.2
kidney:
6.6
OR9I1
ENSSSCG00000035278
ENSG00000172377
Olfactory receptor family 9 subfamily I member 1
Tissue enhanced
Detected in some
esophagus:
2.2
kidney:
2.1
skin:
1.1
OSR1
ENSSSCG00000008606
ENSG00000143867
Odd-skipped related transciption factor 1
Tissue enhanced
Detected in many
urinary bladder:
50.0
OTOA
ENSSSCG00000007838
ENSG00000155719
Otoancorin
Tissue enhanced
Detected in some
urinary bladder:
11.5
OTOG
ENSSSCG00000013376
ENSG00000188162
Otogelin
Tissue enhanced
Detected in some
gallbladder:
4.9
kidney:
3.3
large intestine:
3.9
testis:
11.3
P2RX1
ENSSSCG00000022405
ENSG00000108405
Purinergic receptor P2X 1
Tissue enhanced
Detected in many
penis:
89.2
urinary bladder:
37.3
P4HTM
ENSSSCG00000011368
ENSG00000178467
Prolyl 4-hydroxylase, transmembrane
Tissue enhanced
Detected in many
brain:
19.7
kidney:
17.3
PAQR5
ENSSSCG00000004968
ENSG00000137819
Progestin and adipoQ receptor family member 5
Tissue enhanced
Detected in many
adrenal gland:
46.4
kidney:
53.5
lens:
30.5
testis:
84.8
PAX2
ENSSSCG00000010556
ENSG00000075891
Paired box 2
Tissue enhanced
Detected in some
ductus deferens:
41.9
epididymis:
182.3
kidney:
41.0
male glands:
82.9
PBLD
ENSSSCG00000025876
ENSG00000108187
Phenazine biosynthesis like protein domain containing
Tissue enhanced
Detected in all
kidney:
44.8
liver:
66.2
PDZD3
ENSSSCG00000027710
ENSG00000172367
PDZ domain containing 3
Tissue enhanced
Detected in all
kidney:
41.1
PDZK1
ENSSSCG00000006693
ENSG00000174827
PDZ domain containing 1
Tissue enhanced
Detected in many
epididymis:
69.2
kidney:
109.6
small intestine:
49.1
PECR
ENSSSCG00000022758
ENSG00000115425
Peroxisomal trans-2-enoyl-CoA reductase
Tissue enhanced
Detected in all
kidney:
66.4
PEPD
ENSSSCG00000002868
ENSG00000124299
Peptidase D
Tissue enhanced
Detected in all
kidney:
60.2
PFKFB3
ENSSSCG00000011133
ENSG00000170525
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
Tissue enhanced
Detected in many
cartilage:
45.0
kidney:
49.1
skeletal muscle:
57.0
PGLYRP2
ENSSSCG00000025560
ENSG00000161031
N-acetylmuramoyl-L-alanine amidase precursor
Tissue enhanced
Detected in some
kidney:
7.9
liver:
27.9
PGM5
ENSSSCG00000005243
ENSG00000154330
Phosphoglucomutase 5
Tissue enhanced
Detected in many
ductus deferens:
87.8
smooth muscle:
116.8
urinary bladder:
103.9
PHLDA2
ENSSSCG00000021597
ENSG00000181649
Pleckstrin homology-like domain family A member 2
Tissue enhanced
Detected in many
urinary bladder:
47.4
PHYHD1
ENSSSCG00000005665
ENSG00000175287
Phytanoyl-CoA dioxygenase domain containing 1
Tissue enhanced
Detected in many
bone marrow:
16.0
kidney:
19.2
liver:
19.9
PIPOX
ENSSSCG00000017781
ENSG00000179761
Pipecolic acid and sarcosine oxidase
Tissue enhanced
Detected in many
kidney:
38.4
liver:
34.0
retina:
17.6
PITX2
ENSSSCG00000034708
ENSG00000164093
Pituitary homeobox 2
Tissue enhanced
Detected in many
cornea:
16.8
large intestine:
18.7
mouth:
13.0
pituitary gland:
35.4
urinary bladder:
12.4
PLA1A
ENSSSCG00000011895
ENSG00000144837
Phospholipase A1 member A
Tissue enhanced
Detected in all
kidney:
56.9
PLCH2
ENSSSCG00000029744
ENSG00000149527
Phospholipase C eta 2
Tissue enhanced
Detected in many
brain:
20.1
retina:
21.4
skin:
33.1
urinary bladder:
16.6
PLCL1
ENSSSCG00000016083
ENSG00000115896
Phospholipase C like 1 (inactive)
Tissue enhanced
Detected in many
brain:
48.4
kidney:
32.9
pineal gland:
47.2
PLPP4
ENSSSCG00000010691
ENSG00000203805
Phospholipid phosphatase 4
Tissue enhanced
Detected in many
brain:
19.1
heart:
10.0
kidney:
26.1
PLPPR1
ENSSSCG00000005393
ENSG00000148123
Phospholipid phosphatase related 1
Tissue enhanced
Detected in many
brain:
26.0
kidney:
53.1
liver:
15.6
PMM1
ENSSSCG00000000061
ENSG00000100417
Phosphomannomutase 1
Tissue enhanced
Detected in all
kidney:
67.1
retina:
55.4
POU3F3
ENSSSCG00000022096
ENSG00000198914
POU class 3 homeobox 3
Tissue enhanced
Detected in some
epididymis:
29.3
kidney:
28.5
male glands:
66.6
PPARA
ENSSSCG00000000006
ENSG00000186951
Peroxisome proliferator-activated receptor alpha
Tissue enhanced
Detected in all
kidney:
45.2
liver:
68.3
PPARGC1A
ENSSSCG00000029275
ENSG00000109819
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha
Tissue enhanced
Detected in many
kidney:
43.3
male glands:
65.2
salivary gland:
35.2
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