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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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503 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GAS2L2
ENSSSCG00000039395
ENSG00000270765
Growth arrest specific 2 like 2
Tissue enhanced
Detected in many
fallopian tube:
32.0
kidney:
15.2
upper respiratory system:
15.7
GATA3
ENSSSCG00000011125
ENSG00000107485
Trans-acting T-cell-specific transcription factor GATA-3
Tissue enhanced
Detected in many
kidney:
50.6
male glands:
129.9
skin:
97.0
urinary bladder:
53.3
GATM
ENSSSCG00000004672
ENSG00000171766
Glycine amidinotransferase, mitochondrial
Tissue enhanced
Detected in all
kidney:
41.3
liver:
75.6
male glands:
39.5
GBA3
ENSSSCG00000008754
Glucosylceramidase beta 3 (gene/pseudogene)
Tissue enhanced
Detected in many
kidney:
24.2
liver:
13.8
small intestine:
24.3
GGACT
ENSSSCG00000009523
ENSG00000134864
Gamma-glutamylamine cyclotransferase
Tissue enhanced
Detected in all
kidney:
38.1
GJB4
ENSSSCG00000035068
ENSG00000189433
Gap junction protein beta 4
Tissue enhanced
Detected in some
fallopian tube:
6.8
kidney:
5.7
skin:
13.4
GLB1L
ENSSSCG00000016213
ENSG00000163521
Galactosidase beta 1 like
Tissue enhanced
Detected in all
kidney:
50.3
testis:
56.4
GLIS1
ENSSSCG00000003846
ENSG00000174332
GLIS family zinc finger 1
Tissue enhanced
Detected in many
cartilage:
36.5
ductus deferens:
36.4
kidney:
25.7
GLP2R
ENSSSCG00000017998
ENSG00000065325
Glucagon-like peptide 2 receptor
Tissue enhanced
Detected in many
gallbladder:
27.6
urinary bladder:
21.1
GNAT3
ENSSSCG00000015406
ENSG00000214415
G protein subunit alpha transducin 3
Tissue enhanced
Detected in some
brain:
4.6
kidney:
7.4
GPAT3
ENSSSCG00000009233
ENSG00000138678
Glycerol-3-phosphate acyltransferase 3
Tissue enhanced
Detected in many
kidney:
34.6
testis:
27.6
GPT2
ENSSSCG00000002847
ENSG00000166123
Glutamic--pyruvic transaminase 2
Tissue enhanced
Detected in many
brain:
43.4
kidney:
59.2
liver:
39.4
GRAMD1B
ENSSSCG00000015144
ENSG00000023171
GRAM domain containing 1B
Tissue enhanced
Detected in many
adrenal gland:
111.6
kidney:
48.9
ovary:
43.4
GREM1
ENSSSCG00000033657
ENSG00000166923
Gremlin 1, DAN family BMP antagonist
Tissue enhanced
Detected in many
cartilage:
38.7
gallbladder:
38.9
kidney:
37.6
small intestine:
50.0
smooth muscle:
39.8
GRHL3
ENSSSCG00000003539
ENSG00000158055
Grainyhead like transcription factor 3
Tissue enhanced
Detected in many
mouth:
38.4
urinary bladder:
24.1
HAND1
ENSSSCG00000031080
ENSG00000113196
Heart- and neural crest derivatives-expressed protein 1
Tissue enhanced
Detected in some
heart:
10.2
small intestine:
11.4
smooth muscle:
46.6
urinary bladder:
19.1
HCRTR1
ENSSSCG00000003601
ENSG00000121764
Orexin receptor type 1
Tissue enhanced
Detected in some
brain:
11.2
kidney:
4.6
HDHD3
ENSSSCG00000039861
ENSG00000119431
Haloacid dehalogenase like hydrolase domain containing 3
Tissue enhanced
Detected in all
kidney:
27.6
HES1
ENSSSCG00000031356
ENSG00000114315
Transcription factor HES-1
Tissue enhanced
Detected in all
urinary bladder:
45.1
HMX2
ENSSSCG00000010725
ENSG00000188816
H6 family homeobox 2
Tissue enhanced
Detected in some
brain:
6.6
kidney:
15.4
stomach:
3.4
HNF1A
ENSSSCG00000009919
ENSG00000135100
Hepatocyte nuclear factor 1-alpha
Tissue enhanced
Detected in some
kidney:
44.0
liver:
42.4
small intestine:
18.9
stomach:
31.4
HNF1B
ENSSSCG00000022417
ENSG00000275410
Hepatocyte nuclear factor 1-beta
Tissue enhanced
Detected in many
gallbladder:
24.5
kidney:
75.6
HNF4A
ENSSSCG00000007371
ENSG00000101076
Hepatocyte nuclear factor 4-alpha
Tissue enhanced
Detected in some
kidney:
56.6
large intestine:
36.1
liver:
68.3
small intestine:
31.8
stomach:
61.7
HOXA10
ENSSSCG00000021204
ENSG00000253293
Homeobox protein Hox-A10
Tissue enhanced
Detected in many
cartilage:
42.7
ductus deferens:
37.9
kidney:
38.5
male glands:
45.3
urinary bladder:
40.7
HOXA13
ENSSSCG00000029666
ENSG00000106031
Homeobox protein Hox-A13
Tissue enhanced
Detected in some
cervix:
54.1
male glands:
25.8
urinary bladder:
31.9
HOXB9
ENSSSCG00000039193
ENSG00000170689
Homeobox B9
Tissue enhanced
Detected in some
epididymis:
24.0
kidney:
24.0
large intestine:
28.2
male glands:
20.6
HOXC11
ENSSSCG00000028104
ENSG00000123388
Homeobox C11
Tissue enhanced
Detected in some
ductus deferens:
20.2
kidney:
6.9
skeletal muscle:
12.9
urinary bladder:
8.6
HOXC6
ENSSSCG00000030585
ENSG00000197757
Homeobox C6
Tissue enhanced
Detected in many
breast:
26.7
kidney:
36.7
HOXC9
ENSSSCG00000034474
ENSG00000180806
Homeobox C9
Tissue enhanced
Detected in many
kidney:
20.9
skeletal muscle:
12.3
HOXD11
ENSSSCG00000034741
ENSG00000128713
Homeobox D11
Tissue enhanced
Detected in many
male glands:
55.2
smooth muscle:
21.6
urinary bladder:
18.8
HOXD12
ENSSSCG00000015980
ENSG00000170178
Homeobox D12
Tissue enhanced
Detected in some
male glands:
14.6
penis:
8.0
smooth muscle:
8.0
urinary bladder:
5.3
HOXD13
ENSSSCG00000015979
ENSG00000128714
Homeobox D13
Tissue enhanced
Detected in some
cervix:
20.0
large intestine:
11.3
male glands:
30.5
penis:
13.1
smooth muscle:
21.9
urinary bladder:
12.0
HOXD3
ENSSSCG00000015985
ENSG00000128652
Homeobox D3
Tissue enhanced
Detected in many
epididymis:
21.2
kidney:
23.0
male glands:
57.4
HOXD4
ENSSSCG00000015984
ENSG00000170166
Homeobox D4
Tissue enhanced
Detected in many
epididymis:
59.9
kidney:
38.0
male glands:
48.8
HOXD9
ENSSSCG00000015982
ENSG00000128709
Homeobox D9
Tissue enhanced
Detected in many
cartilage:
40.7
epididymis:
30.9
kidney:
34.1
male glands:
31.3
HS3ST5
ENSSSCG00000004433
ENSG00000249853
Heparan sulfate-glucosamine 3-sulfotransferase 5
Tissue enhanced
Detected in many
adrenal gland:
11.0
brain:
21.2
ductus deferens:
14.5
kidney:
13.4
HSD17B14
ENSSSCG00000003138
ENSG00000087076
Hydroxysteroid 17-beta dehydrogenase 14
Tissue enhanced
Detected in all
kidney:
90.5
liver:
62.6
HSD17B2
ENSSSCG00000038221
ENSG00000086696
Estradiol 17-beta-dehydrogenase 2
Tissue enhanced
Detected in many
cornea:
40.1
lens:
26.6
liver:
26.1
upper respiratory system:
23.7
urinary bladder:
41.4
HTR1F
ENSSSCG00000030227
ENSG00000179097
5-hydroxytryptamine receptor 1F
Tissue enhanced
Detected in some
brain:
6.2
kidney:
9.9
salivary gland:
10.0
vagus nerve:
9.0
IGFBP3
ENSSSCG00000038783
ENSG00000146674
Insulin-like growth factor-binding protein 3
Tissue enhanced
Detected in many
upper respiratory system:
84.2
urinary bladder:
77.7
IL9
ENSSSCG00000025818
ENSG00000145839
Interleukin-9 precursor
Tissue enhanced
Detected in some
brain:
2.6
kidney:
3.2
pineal gland:
9.0
retina:
3.1
INSRR
ENSSSCG00000006465
ENSG00000027644
Insulin receptor related receptor
Tissue enhanced
Detected in some
adrenal gland:
4.3
kidney:
16.6
KBTBD11
ENSSSCG00000029796
ENSG00000176595
Kelch repeat and BTB domain containing 11
Tissue enhanced
Detected in many
brain:
24.7
kidney:
13.9
KCNJ16
ENSSSCG00000034358
ENSG00000153822
Potassium voltage-gated channel subfamily J member 16
Tissue enhanced
Detected in many
brain:
17.8
kidney:
59.2
KCNK13
ENSSSCG00000002432
ENSG00000152315
Potassium channel subfamily K member 13
Tissue enhanced
Detected in some
adipose tissue:
8.6
kidney:
20.2
testis:
10.5
KCNK5
ENSSSCG00000025423
ENSG00000164626
Potassium two pore domain channel subfamily K member 5
Tissue enhanced
Detected in many
cartilage:
29.6
kidney:
24.7
KCNQ1
ENSSSCG00000039556
ENSG00000053918
Potassium voltage-gated channel subfamily Q member 1
Tissue enhanced
Detected in many
adrenal gland:
44.5
kidney:
34.7
male glands:
35.3
stomach:
54.3
KCNS3
ENSSSCG00000031905
ENSG00000170745
Potassium voltage-gated channel subfamily S member 3
Tissue enhanced
Detected in many
brain:
15.7
gallbladder:
17.2
urinary bladder:
14.7
KCP
ENSSSCG00000016574
ENSG00000135253
Kielin/chordin-like protein
Tissue enhanced
Detected in many
epididymis:
63.0
kidney:
41.0
lymphoid tissue:
27.9
KIAA0040
ENSSSCG00000040719
ENSG00000235750
KIAA0040
Tissue enhanced
Detected in many
cartilage:
42.1
kidney:
33.7
lymphoid tissue:
35.5
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