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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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503 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CFAP74
ENSSSCG00000030513
ENSG00000142609
Cilia and flagella associated protein 74
Tissue enhanced
Detected in many
kidney:
23.9
lung:
25.6
CGNL1
ENSSSCG00000035038
ENSG00000128849
Cingulin like 1
Tissue enhanced
Detected in many
kidney:
62.8
thyroid gland:
72.5
CLCN5
ENSSSCG00000023026
ENSG00000171365
H(+)/Cl(-) exchange transporter 5
Tissue enhanced
Detected in many
kidney:
46.2
CLDN19
ENSSSCG00000034921
ENSG00000164007
Claudin-19
Tissue enhanced
Detected in all
kidney:
22.5
vagus nerve:
79.4
CLDN2
ENSSSCG00000037234
ENSG00000165376
Claudin-2
Tissue enhanced
Detected in some
choroid plexus:
53.5
gallbladder:
48.1
kidney:
57.6
small intestine:
42.2
stomach:
32.9
CLDN8
ENSSSCG00000012030
ENSG00000156284
Claudin-8
Tissue enhanced
Detected in many
breast:
64.0
kidney:
44.5
male glands:
37.7
thyroid gland:
54.2
CLRN3
ENSSSCG00000010753
ENSG00000180745
Clarin 3
Tissue enhanced
Detected in many
kidney:
21.1
large intestine:
34.6
small intestine:
28.1
CNDP1
ENSSSCG00000004869
ENSG00000150656
Beta-Ala-His dipeptidase
Tissue enhanced
Detected in many
brain:
15.7
epididymis:
26.7
kidney:
52.6
CNN1
ENSSSCG00000013614
ENSG00000130176
Calponin-1
Tissue enhanced
Detected in many
smooth muscle:
549.0
urinary bladder:
230.6
CNTFR
ENSSSCG00000010974
ENSG00000122756
Ciliary neurotrophic factor receptor
Tissue enhanced
Detected in many
urinary bladder:
60.4
COBLL1
ENSSSCG00000025598
ENSG00000082438
Cordon-bleu WH2 repeat protein like 1
Tissue enhanced
Detected in many
adrenal gland:
67.3
kidney:
81.8
COLQ
ENSSSCG00000028911
ENSG00000206561
Collagen like tail subunit of asymmetric acetylcholinesterase
Tissue enhanced
Detected in many
kidney:
19.9
CPEB4
ENSSSCG00000016981
ENSG00000113742
Cytoplasmic polyadenylation element binding protein 4
Tissue enhanced
Detected in all
kidney:
103.8
lens:
104.0
CPLX1
ENSSSCG00000037527
ENSG00000168993
Complexin 1
Tissue enhanced
Detected in some
brain:
72.4
kidney:
15.6
retina:
24.1
CRYL1
ENSSSCG00000009268
ENSG00000165475
Lambda-crystallin homolog
Tissue enhanced
Detected in all
kidney:
135.2
CTTNBP2
ENSSSCG00000016625
ENSG00000077063
Cortactin binding protein 2
Tissue enhanced
Detected in all
kidney:
75.6
CXCL11
ENSSSCG00000008978
ENSG00000169248
C-X-C motif chemokine 11 precursor
Tissue enhanced
Detected in some
kidney:
12.1
large intestine:
22.7
testis:
8.4
CXCL14
ENSSSCG00000014310
ENSG00000145824
C-X-C motif chemokine 14 precursor
Tissue enhanced
Detected in many
skin:
100.3
stomach:
67.6
urinary bladder:
72.5
CYP2W1
ENSSSCG00000007549
ENSG00000073067
Cytochrome P450 family 2 subfamily W member 1
Tissue enhanced
Detected in many
stomach:
7.7
urinary bladder:
9.1
DAO
ENSSSCG00000009942
ENSG00000110887
D-amino-acid oxidase
Tissue enhanced
Detected in some
brain:
18.4
kidney:
92.3
liver:
26.6
small intestine:
16.5
DCDC2
ENSSSCG00000001085
ENSG00000146038
Doublecortin domain containing 2
Tissue enhanced
Detected in many
choroid plexus:
29.7
fallopian tube:
33.3
kidney:
30.9
DDAH1
ENSSSCG00000040735
ENSG00000153904
Dimethylarginine dimethylaminohydrolase 1
Tissue enhanced
Detected in many
brain:
48.9
kidney:
54.5
DDO
ENSSSCG00000004401
ENSG00000203797
D-aspartate oxidase
Tissue enhanced
Detected in many
heart:
22.1
kidney:
22.5
male glands:
19.9
DES
ENSSSCG00000020785
ENSG00000175084
Desmin
Tissue enhanced
Detected in many
skeletal muscle:
301.6
smooth muscle:
547.0
urinary bladder:
220.0
DLK1
ENSSSCG00000035805
ENSG00000185559
Protein delta homolog 1 isoform B precursor
Tissue enhanced
Detected in some
brain:
56.5
kidney:
15.0
pituitary gland:
63.0
DMRT2
ENSSSCG00000005233
ENSG00000173253
Doublesex and mab-3 related transcription factor 2
Tissue enhanced
Detected in some
adipose tissue:
28.1
kidney:
17.9
mesothelial tissue:
9.1
upper respiratory system:
9.8
DPYD
ENSSSCG00000006878
ENSG00000188641
Dihydropyrimidine dehydrogenase
Tissue enhanced
Detected in all
kidney:
52.3
liver:
46.7
ECHDC2
ENSSSCG00000003854
ENSG00000121310
Enoyl-CoA hydratase domain containing 2
Tissue enhanced
Detected in all
kidney:
81.4
liver:
79.8
EGF
ENSSSCG00000009134
ENSG00000138798
Pro-epidermal growth factor precursor
Tissue enhanced
Detected in many
choroid plexus:
46.4
kidney:
90.0
male glands:
52.2
salivary gland:
32.6
ELF3
ENSSSCG00000010922
ENSG00000163435
E74 like ETS transcription factor 3
Tissue enhanced
Detected in many
large intestine:
35.4
stomach:
54.7
upper respiratory system:
50.1
urinary bladder:
61.1
ENOSF1
ENSSSCG00000027169
ENSG00000132199
Mitochondrial enolase superfamily member 1
Tissue enhanced
Detected in all
kidney:
42.8
EPB41L3
ENSSSCG00000003687
ENSG00000082397
Erythrocyte membrane protein band 4.1 like 3
Tissue enhanced
Detected in all
kidney:
67.4
EPN3
ENSSSCG00000027226
ENSG00000049283
Epsin 3
Tissue enhanced
Detected in many
kidney:
33.8
male glands:
29.5
salivary gland:
24.1
stomach:
33.2
thyroid gland:
22.0
ERICH4
ENSSSCG00000040022
ENSG00000204978
Glutamate rich 4
Tissue enhanced
Detected in many
kidney:
13.1
small intestine:
14.2
ESRRG
ENSSSCG00000010814
ENSG00000196482
Estrogen related receptor gamma
Tissue enhanced
Detected in many
kidney:
33.1
male glands:
23.1
salivary gland:
74.0
EVC
ENSSSCG00000032637
ENSG00000072840
EvC ciliary complex subunit 1
Tissue enhanced
Detected in all
kidney:
55.2
EVC2
ENSSSCG00000024399
ENSG00000173040
EvC ciliary complex subunit 2
Tissue enhanced
Detected in all
kidney:
32.2
EVX2
ENSSSCG00000023146
ENSG00000174279
Even-skipped homeobox 2
Tissue enhanced
Detected in some
cervix:
16.2
male glands:
8.2
penis:
11.0
smooth muscle:
24.4
urinary bladder:
7.4
FAM171A2
ENSSSCG00000017356
ENSG00000161682
Family with sequence similarity 171 member A2
Tissue enhanced
Detected in many
kidney:
29.7
male glands:
22.8
FAM43B
ENSSSCG00000030706
ENSG00000183114
Family with sequence similarity 43 member B
Tissue enhanced
Detected in many
kidney:
23.9
male glands:
20.7
stomach:
22.1
FBP1
ENSSSCG00000031174
ENSG00000165140
Fructose-1,6-bisphosphatase 1
Tissue enhanced
Detected in all
kidney:
61.0
liver:
48.3
FGF9
ENSSSCG00000009278
ENSG00000102678
Fibroblast growth factor 9
Tissue enhanced
Detected in many
adrenal gland:
30.5
kidney:
21.7
FLRT1
ENSSSCG00000013044
ENSG00000126500
Fibronectin leucine rich transmembrane protein 1
Tissue enhanced
Detected in many
brain:
12.6
kidney:
18.7
lymphoid tissue:
15.7
thyroid gland:
15.4
FOXF1
ENSSSCG00000038460
ENSG00000103241
Forkhead box F1
Tissue enhanced
Detected in many
gallbladder:
34.5
smooth muscle:
40.2
urinary bladder:
40.6
FOXF2
ENSSSCG00000037195
ENSG00000137273
Forkhead box F2
Tissue enhanced
Detected in many
gallbladder:
32.8
smooth muscle:
23.8
urinary bladder:
17.5
FOXL1
ENSSSCG00000002658
ENSG00000176678
Forkhead box L1
Tissue enhanced
Detected in many
cartilage:
16.4
penis:
16.0
urinary bladder:
23.1
FREM1
ENSSSCG00000039025
ENSG00000164946
FRAS1 related extracellular matrix 1
Tissue enhanced
Detected in many
choroid plexus:
30.0
kidney:
39.0
FREM2
ENSSSCG00000009364
ENSG00000150893
FRAS1 related extracellular matrix protein 2
Tissue enhanced
Detected in many
choroid plexus:
53.6
kidney:
23.0
thyroid gland:
23.4
GAL3ST1
ENSSSCG00000010009
ENSG00000128242
Galactosylceramide sulfotransferase
Tissue enhanced
Detected in many
brain:
27.1
kidney:
20.4
vagus nerve:
23.2
GALR1
ENSSSCG00000036984
ENSG00000166573
Galanin receptor 1
Tissue enhanced
Detected in many
choroid plexus:
23.4
urinary bladder:
19.0
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