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Gene name
Human disease related genes
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UMAP gene cluster
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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RELEASE HISTORY
1175 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FAM71D
ENSSSCG00000002286
ENSG00000172717
Family with sequence similarity 71 member D
Tissue enriched
Detected in some
testis:
102.6
FAM71E1
ENSSSCG00000003219
ENSG00000142530
Family with sequence similarity 71 member E1
Tissue enriched
Detected in many
testis:
106.7
FAM71F1
ENSSSCG00000016582
ENSG00000135248
Family with sequence similarity 71 member F1
Tissue enriched
Detected in some
testis:
76.6
FAM71F2
ENSSSCG00000016583
ENSG00000205085
Family with sequence similarity 71 member F2
Tissue enriched
Detected in some
testis:
119.0
FANCD2OS
ENSSSCG00000034155
ENSG00000163705
FANCD2 opposite strand
Tissue enriched
Detected in some
testis:
68.3
FATE1
ENSSSCG00000039345
ENSG00000147378
Fetal and adult testis-expressed transcript protein homolog
Tissue enriched
Detected in some
testis:
55.2
FCGBP
ENSSSCG00000027515
ENSG00000275395
Fc fragment of IgG binding protein
Tissue enriched
Detected in some
male glands:
762.8
FER1L5
ENSSSCG00000025022
ENSG00000249715
Fer-1 like family member 5
Tissue enriched
Detected in some
testis:
23.4
FGFR1OP
ENSSSCG00000004023
ENSG00000213066
FGFR1 oncogene partner
Tissue enriched
Detected in all
testis:
54.8
FKBP6
ENSSSCG00000007702
ENSG00000077800
FK506 binding protein 6
Tissue enriched
Detected in single
testis:
66.6
FNDC11
ENSSSCG00000038651
ENSG00000125531
Fibronectin type III domain containing 11
Tissue enriched
Detected in single
testis:
93.7
FNDC8
ENSSSCG00000021617
ENSG00000073598
Fibronectin type III domain containing 8
Tissue enriched
Detected in single
testis:
90.8
FOXM1
ENSSSCG00000000739
ENSG00000111206
Forkhead box M1
Tissue enriched
Detected in many
testis:
47.4
FOXR1
ENSSSCG00000015101
ENSG00000176302
Forkhead box R1
Tissue enriched
Detected in some
testis:
14.2
FREM3
ENSSSCG00000040070
ENSG00000183090
FRAS1 related extracellular matrix 3
Tissue enriched
Detected in some
epididymis:
15.6
FSCN3
ENSSSCG00000016592
ENSG00000106328
Fascin-3
Tissue enriched
Detected in single
testis:
69.4
FSHR
ENSSSCG00000029084
ENSG00000170820
Follicle-stimulating hormone receptor precursor
Tissue enriched
Detected in some
testis:
18.0
FSIP2
ENSSSCG00000016024
ENSG00000188738
Fibrous sheath interacting protein 2
Tissue enriched
Detected in single
testis:
91.5
FTMT
ENSSSCG00000014231
ENSG00000181867
Ferritin mitochondrial
Tissue enriched
Detected in some
testis:
61.8
GALNT8
ENSSSCG00000000718
ENSG00000130035
Polypeptide N-acetylgalactosaminyltransferase 8
Tissue enriched
Detected in some
epididymis:
92.8
GALNTL5
ENSSSCG00000016431
ENSG00000106648
Polypeptide N-acetylgalactosaminyltransferase like 5
Tissue enriched
Detected in many
testis:
63.6
GAPDHS
ENSSSCG00000002888
ENSG00000105679
Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic
Tissue enriched
Detected in many
testis:
119.2
GATA2
ENSSSCG00000011618
ENSG00000179348
Endothelial transcription factor GATA-2
Tissue enriched
Detected in many
male glands:
214.6
GFPT1
ENSSSCG00000008339
ENSG00000198380
Glutamine--fructose-6-phosphate aminotransferase
Tissue enriched
Detected in all
male glands:
198.6
GGN
ENSSSCG00000002957
ENSG00000179168
Gametogenetin
Tissue enriched
Detected in many
testis:
106.0
GK2
ENSSSCG00000009257
ENSG00000196475
Glycerol kinase 2
Tissue enriched
Detected in some
testis:
107.4
GLIPR1L1
ENSSSCG00000022055
ENSG00000173401
GLIPR1 like 1
Tissue enriched
Detected in all
testis:
53.0
GLIPR1L2
ENSSSCG00000025915
ENSG00000180481
GLIPR1 like 2
Tissue enriched
Detected in some
testis:
14.0
GNE
ENSSSCG00000037468
ENSG00000159921
Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase
Tissue enriched
Detected in all
male glands:
122.3
GOT1L1
ENSSSCG00000038325
ENSG00000169154
Glutamic-oxaloacetic transaminase 1 like 1
Tissue enriched
Detected in single
testis:
29.0
GPR135
ENSSSCG00000032928
ENSG00000181619
G protein-coupled receptor 135
Tissue enriched
Detected in many
testis:
37.1
GPR161
ENSSSCG00000006302
ENSG00000143147
G protein-coupled receptor 161
Tissue enriched
Detected in many
testis:
57.7
GPX5
ENSSSCG00000001214
ENSG00000224586
Epididymal secretory glutathione peroxidase
Tissue enriched
Detected in many
epididymis:
80.6
GPX6
ENSSSCG00000001213
ENSG00000198704
Glutathione peroxidase 6 precursor
Tissue enriched
Detected in some
male glands:
109.1
GRK4
ENSSSCG00000008694
ENSG00000125388
G protein-coupled receptor kinase 4
Tissue enriched
Detected in many
testis:
73.1
GRXCR1
ENSSSCG00000008804
ENSG00000215203
Glutaredoxin and cysteine rich domain containing 1
Tissue enriched
Detected in many
testis:
29.6
GSG1
ENSSSCG00000039316
ENSG00000111305
Germ cell associated 1
Tissue enriched
Detected in some
testis:
187.0
GSTM3
ENSSSCG00000006821
ENSG00000134202
Glutathione S-transferase Mu 3
Tissue enriched
Detected in some
testis:
140.1
GTSF1
ENSSSCG00000026333
ENSG00000170627
Gametocyte specific factor 1
Tissue enriched
Detected in some
testis:
66.3
H1FNT
ENSSSCG00000000820
ENSG00000187166
H1 histone family member N, testis specific
Tissue enriched
Detected in single
testis:
83.2
HASPIN
ENSSSCG00000031821
ENSG00000177602
Histone H3 associated protein kinase
Tissue enriched
Detected in many
testis:
73.8
HBE1
ENSSSCG00000014726
ENSG00000213931
Hemoglobin subunit epsilon
Tissue enriched
Detected in some
epididymis:
20.7
HELZ2
ENSSSCG00000003306
ENSG00000130589
Helicase with zinc finger 2
Tissue enriched
Detected in some
epididymis:
7.6
HEMGN
ENSSSCG00000005371
ENSG00000136929
Hemogen
Tissue enriched
Detected in all
testis:
93.2
HIPK4
ENSSSCG00000021917
ENSG00000160396
Homeodomain interacting protein kinase 4
Tissue enriched
Detected in many
testis:
55.0
HIST1H1T
ENSSSCG00000033398
ENSG00000187475
Histone cluster 1 H1 family member t
Tissue enriched
Detected in some
testis:
281.9
HIST1H2BA
ENSSSCG00000036045
ENSG00000146047
Histone cluster 1 H2B family member a
Tissue enriched
Detected in some
testis:
359.7
HMGB4
ENSSSCG00000021247
ENSG00000176256
High mobility group box 4
Tissue enriched
Detected in single
testis:
206.4
HORMAD1
ENSSSCG00000006649
ENSG00000143452
HORMA domain-containing protein 1
Tissue enriched
Detected in some
testis:
42.9
HORMAD2
ENSSSCG00000009995
ENSG00000176635
HORMA domain containing 2
Tissue enriched
Detected in some
testis:
51.1
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