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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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1175 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DDI1
ENSSSCG00000014995
ENSG00000170967
DNA damage inducible 1 homolog 1
Tissue enriched
Detected in many
testis:
57.0
DDX25
ENSSSCG00000015223
ENSG00000109832
DEAD-box helicase 25
Tissue enriched
Detected in some
testis:
49.3
DDX4
ENSSSCG00000016913
ENSG00000152670
Probable ATP-dependent RNA helicase DDX4
Tissue enriched
Detected in some
testis:
73.8
DDX43
ENSSSCG00000004287
ENSG00000080007
DEAD-box helicase 43
Tissue enriched
Detected in single
testis:
21.5
DDX53
ENSSSCG00000012169
ENSG00000184735
DEAD-box helicase 53
Tissue enriched
Detected in some
testis:
25.4
DEFB110
ENSSSCG00000001743
ENSG00000203970
Beta-defensin 110 precursor
Tissue enriched
Detected in some
epididymis:
52.3
DEFB114
ENSSSCG00000001741
ENSG00000177684
Beta-defensin 114 precursor
Tissue enriched
Detected in some
epididymis:
18.0
DEFB116
ENSSSCG00000007215
ENSG00000215545
Defensin beta 116
Tissue enriched
Detected in some
epididymis:
104.3
DEFB123
ENSSSCG00000007226
ENSG00000180424
Defensin beta 123
Tissue enriched
Detected in some
testis:
76.0
DEFB125
ENSSSCG00000007217
ENSG00000178591
Beta-defensin 125 precursor
Tissue enriched
Detected in single
epididymis:
135.8
DEFB127
ENSSSCG00000035759
ENSG00000088782
Defensin beta 127
Tissue enriched
Detected in some
epididymis:
106.9
DEFB128
ENSSSCG00000034080
ENSG00000185982
Defensin beta 128
Tissue enriched
Detected in some
epididymis:
252.3
DEFB129
ENSSSCG00000007218
ENSG00000125903
Beta-defensin 129 precursor
Tissue enriched
Detected in single
epididymis:
327.3
DGKK
ENSSSCG00000012308
ENSG00000274588
Diacylglycerol kinase kappa
Tissue enriched
Detected in some
ductus deferens:
25.4
DHRS4
ENSSSCG00000002013
ENSG00000157326,ENSG00000187630
Dehydrogenase/reductase SDR family member 4
Tissue enriched
Detected in many
testis:
279.6
DKKL1
ENSSSCG00000038579
ENSG00000104901
Dickkopf like acrosomal protein 1
Tissue enriched
Detected in all
testis:
104.9
DMC1
ENSSSCG00000000103
ENSG00000100206
DNA meiotic recombinase 1
Tissue enriched
Detected in some
testis:
24.8
DMRT1
ENSSSCG00000005236
ENSG00000137090
Doublesex- and mab-3-related transcription factor 1
Tissue enriched
Detected in some
testis:
35.7
DMRTB1
ENSSSCG00000003847
ENSG00000143006
DMRT like family B with proline rich C-terminal 1
Tissue enriched
Detected in some
testis:
28.8
DNAAF1
ENSSSCG00000002675
ENSG00000154099
Dynein axonemal assembly factor 1
Tissue enriched
Detected in some
testis:
116.9
DNAH8
ENSSSCG00000001588
ENSG00000124721
Dynein axonemal heavy chain 8
Tissue enriched
Detected in some
testis:
45.9
DNAJB8
ENSSSCG00000011617
ENSG00000179407
DnaJ heat shock protein family (Hsp40) member B8
Tissue enriched
Detected in single
testis:
135.5
DNAJC10
ENSSSCG00000016017
ENSG00000077232
DnaJ heat shock protein family (Hsp40) member C10
Tissue enriched
Detected in all
male glands:
170.0
DNAJC5B
ENSSSCG00000006217
ENSG00000147570
DnaJ homolog subfamily C member 5B
Tissue enriched
Detected in some
testis:
60.2
DOPEY2
ENSSSCG00000012054
ENSG00000142197
Dopey family member 2
Tissue enriched
Detected in many
male glands:
125.4
DPEP3
ENSSSCG00000023514
ENSG00000141096
Dipeptidase 3
Tissue enriched
Detected in all
testis:
25.6
DPY19L2
ENSSSCG00000016663
ENSG00000177990
Dpy-19 like 2
Tissue enriched
Detected in some
testis:
65.2
DUSP21
ENSSSCG00000023500
ENSG00000189037
Dual specificity phosphatase 21
Tissue enriched
Detected in some
testis:
39.0
DYRK4
ENSSSCG00000000721
ENSG00000010219
Dual specificity tyrosine phosphorylation regulated kinase 4
Tissue enriched
Detected in some
testis:
44.2
DYTN
ENSSSCG00000035158
ENSG00000232125
Dystrotelin
Tissue enriched
Detected in single
testis:
5.8
EFCAB13
ENSSSCG00000017305
ENSG00000178852
EF-hand calcium binding domain 13
Tissue enriched
Detected in single
testis:
22.7
EFCAB3
ENSSSCG00000017304
ENSG00000172421
EF-hand calcium binding domain 3
Tissue enriched
Detected in some
testis:
39.3
EFCAB5
ENSSSCG00000017794
ENSG00000176927
EF-hand calcium binding domain 5
Tissue enriched
Detected in many
testis:
33.5
EFCAB9
ENSSSCG00000016995
ENSG00000214360
EF-hand calcium binding domain 9
Tissue enriched
Detected in many
testis:
35.2
EIF4EBP3
ENSSSCG00000020835
ENSG00000243056
Eukaryotic translation initiation factor 4E-binding protein 3
Tissue enriched
Detected in all
male glands:
143.5
ELF5
ENSSSCG00000013301
ENSG00000135374
ETS-related transcription factor Elf-5
Tissue enriched
Detected in all
male glands:
114.9
ELOF1
ENSSSCG00000013613
ENSG00000130165
Elongation factor 1 homolog
Tissue enriched
Detected in all
testis:
130.2
ELSPBP1
ENSSSCG00000003125
ENSG00000169393
Epididymal sperm-binding protein 1 precursor
Tissue enriched
Detected in some
epididymis:
206.4
EXOSC3
ENSSSCG00000005355
ENSG00000107371
Exosome component 3
Tissue enriched
Detected in all
testis:
28.4
FAM104A
ENSSSCG00000031686
ENSG00000133193
Family with sequence similarity 104 member A
Tissue enriched
Detected in all
testis:
75.5
FAM166A
ENSSSCG00000005848
ENSG00000188163
Family with sequence similarity 166 member A
Tissue enriched
Detected in single
testis:
62.8
FAM170B
ENSSSCG00000010387
ENSG00000172538
Family with sequence similarity 170 member B
Tissue enriched
Detected in single
testis:
35.4
FAM187B
ENSSSCG00000027989
ENSG00000177558
Family with sequence similarity 187 member B
Tissue enriched
Detected in single
testis:
54.1
FAM209B
ENSSSCG00000007498
ENSG00000124103,ENSG00000213714
Protein FAM209B precursor
Tissue enriched
Detected in some
testis:
83.5
FAM221B
ENSSSCG00000005324
ENSG00000204930
Family with sequence similarity 221 member B
Tissue enriched
Detected in many
testis:
43.6
FAM227B
ENSSSCG00000004648
ENSG00000166262
Family with sequence similarity 227 member B
Tissue enriched
Detected in many
testis:
38.7
FAM46D
ENSSSCG00000012450
ENSG00000174016
Family with sequence similarity 46 member D
Tissue enriched
Detected in single
testis:
32.6
FAM50B
ENSSSCG00000026323
ENSG00000145945
Family with sequence similarity 50 member B
Tissue enriched
Detected in single
testis:
94.1
FAM71A
ENSSSCG00000015596
ENSG00000162771
Family with sequence similarity 71 member A
Tissue enriched
Detected in single
testis:
88.0
FAM71B
ENSSSCG00000017057
ENSG00000170613
Family with sequence similarity 71 member B
Tissue enriched
Detected in many
testis:
77.7
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