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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
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Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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THE PROJECT
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1175 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CCDC185
ENSSSCG00000010888
ENSG00000178395
Coiled-coil domain containing 185
Tissue enriched
Detected in some
testis:
64.8
CCDC188
ENSSSCG00000010139
ENSG00000234409
Coiled-coil domain containing 188
Tissue enriched
Detected in single
testis:
31.9
CCDC197
ENSSSCG00000039415
ENSG00000175699
Coiled-coil domain containing 197
Tissue enriched
Detected in some
testis:
68.4
CCDC33
ENSSSCG00000001908
ENSG00000140481
Coiled-coil domain containing 33
Tissue enriched
Detected in some
testis:
63.2
CCDC38
ENSSSCG00000000894
ENSG00000165972
Coiled-coil domain containing 38
Tissue enriched
Detected in some
testis:
67.7
CCDC54
ENSSSCG00000031231
ENSG00000138483
Coiled-coil domain containing 54
Tissue enriched
Detected in single
testis:
55.7
CCDC62
ENSSSCG00000009787
ENSG00000130783
Coiled-coil domain containing 62
Tissue enriched
Detected in all
testis:
68.3
CCDC63
ENSSSCG00000009829
ENSG00000173093
Coiled-coil domain containing 63
Tissue enriched
Detected in some
testis:
44.6
CCDC70
ENSSSCG00000009383
ENSG00000123171
Coiled-coil domain containing 70
Tissue enriched
Detected in some
testis:
71.7
CCDC83
ENSSSCG00000014912
ENSG00000150676
Coiled-coil domain containing 83
Tissue enriched
Detected in some
testis:
70.9
CCDC87
ENSSSCG00000012933
ENSG00000182791
Coiled-coil domain containing 87
Tissue enriched
Detected in many
testis:
37.6
CCER1
ENSSSCG00000039400
ENSG00000197651
Coiled-coil glutamate rich protein 1
Tissue enriched
Detected in single
testis:
99.2
CCHCR1
ENSSSCG00000001391
ENSG00000204536
Coiled-coil alpha-helical rod protein 1
Tissue enriched
Detected in many
testis:
62.1
CCIN
ENSSSCG00000005340
ENSG00000185972
Calicin
Tissue enriched
Detected in single
testis:
92.9
CCT6B
ENSSSCG00000022196
ENSG00000132141
Chaperonin containing TCP1 subunit 6B
Tissue enriched
Detected in many
testis:
50.4
CCT8L2
ENSSSCG00000016428
ENSG00000198445
Chaperonin containing TCP1 subunit 8 like 2
Tissue enriched
Detected in single
testis:
28.5
CD164
ENSSSCG00000004414
ENSG00000135535
CD164 molecule
Tissue enriched
Detected in all
male glands:
185.5
CDKL3
ENSSSCG00000014302
ENSG00000006837
Cyclin dependent kinase like 3
Tissue enriched
Detected in many
testis:
42.6
CELA2A
ENSSSCG00000003459
ENSG00000142615,ENSG00000215704
Chymotrypsin-like elastase family member 2A
Tissue enriched
Detected in some
testis:
29.8
CEP164
ENSSSCG00000015080
ENSG00000110274
Centrosomal protein 164
Tissue enriched
Detected in all
testis:
56.2
CERS4
ENSSSCG00000013595
ENSG00000090661
Ceramide synthase 4
Tissue enriched
Detected in many
epididymis:
111.9
CETN1
ENSSSCG00000028613
ENSG00000177143
Centrin 1
Tissue enriched
Detected in single
testis:
165.2
CFAP97
ENSSSCG00000015791
ENSG00000164323
Cilia and flagella associated protein 97
Tissue enriched
Detected in all
testis:
129.9
CFAP97D1
ENSSSCG00000017373
ENSG00000231256
CFAP97 domain containing 1
Tissue enriched
Detected in some
testis:
143.7
CKLF
ENSSSCG00000031161
ENSG00000217555
Chemokine like factor
Tissue enriched
Detected in some
testis:
49.2
CLCN6
ENSSSCG00000003429
ENSG00000011021
Chloride voltage-gated channel 6
Tissue enriched
Detected in all
epididymis:
70.2
CLDN25
ENSSSCG00000015051
ENSG00000228607
Claudin 25
Tissue enriched
Detected in some
epididymis:
30.6
CLEC12B
ENSSSCG00000000651
ENSG00000256660
C-type lectin domain family 12 member B
Tissue enriched
Detected in some
testis:
23.3
CLPB
ENSSSCG00000036887
ENSG00000162129
ClpB homolog, mitochondrial AAA ATPase chaperonin
Tissue enriched
Detected in all
testis:
84.4
CMTM2
ENSSSCG00000031837
ENSG00000140932
CKLF like MARVEL transmembrane domain containing 2
Tissue enriched
Detected in some
testis:
101.3
CNBD1
ENSSSCG00000036161
ENSG00000176571
Cyclic nucleotide binding domain containing 1
Tissue enriched
Detected in single
testis:
12.6
CNBD2
ENSSSCG00000007313
ENSG00000149646
Cyclic nucleotide binding domain containing 2
Tissue enriched
Detected in some
testis:
57.2
CNTD1
ENSSSCG00000040866
ENSG00000176563
Cyclin N-terminal domain containing 1
Tissue enriched
Detected in some
testis:
40.0
COIL
ENSSSCG00000017613
ENSG00000121058
Coilin
Tissue enriched
Detected in all
testis:
64.7
COX6B2
ENSSSCG00000035612
ENSG00000160471
Cytochrome c oxidase subunit 6B2
Tissue enriched
Detected in some
testis:
128.8
COX7B2
ENSSSCG00000036922
ENSG00000170516
Cytochrome c oxidase subunit 7B2
Tissue enriched
Detected in some
testis:
51.0
COX8C
ENSSSCG00000002462
ENSG00000187581
Cytochrome c oxidase subunit 8C
Tissue enriched
Detected in some
testis:
30.8
CPA2
ENSSSCG00000016559
ENSG00000158516
Carboxypeptidase A2
Tissue enriched
Detected in some
testis:
24.2
CPA5
ENSSSCG00000016555
ENSG00000158525
Carboxypeptidase A5
Tissue enriched
Detected in some
testis:
53.8
CREB3
ENSSSCG00000005318
ENSG00000107175
Cyclic AMP-responsive element-binding protein 3
Tissue enriched
Detected in all
male glands:
104.0
CREM
ENSSSCG00000011106
ENSG00000095794
CAMP responsive element modulator
Tissue enriched
Detected in all
testis:
83.2
CRISP2
ENSSSCG00000001736
ENSG00000124490
Cysteine-rich secretory protein 2 precursor
Tissue enriched
Detected in single
testis:
267.5
CST11
ENSSSCG00000007122
ENSG00000125831
Cystatin 11
Tissue enriched
Detected in some
epididymis:
311.5
CST8
ENSSSCG00000007124
ENSG00000125815
Cystatin 8
Tissue enriched
Detected in some
testis:
60.7
CTBS
ENSSSCG00000003758
ENSG00000117151
Chitobiase
Tissue enriched
Detected in some
epididymis:
103.9
CXorf65
ENSSSCG00000030796
ENSG00000204165
Chromosome X open reading frame 65
Tissue enriched
Detected in single
testis:
17.7
CYLC1
ENSSSCG00000012455
ENSG00000183035
Cylicin 1
Tissue enriched
Detected in single
testis:
47.0
CYP19A1
ENSSSCG00000030168
ENSG00000137869
Aromatase 1
Tissue enriched
Detected in all
testis:
249.1
CYP8B1
ENSSSCG00000034388
ENSG00000180432
5-beta-cholestane-3-alpha,7-alpha-diol 12-alpha-hydroxylase
Tissue enriched
Detected in some
epididymis:
58.8
DAZL
ENSSSCG00000030671
ENSG00000092345
Deleted in azoospermia like
Tissue enriched
Detected in single
testis:
67.6
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