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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Cancers
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Other congenital disorders
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Subclass
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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1175 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
Expand
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
2.
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
C12orf50
ENSSSCG00000000924
ENSG00000165805
Chromosome 12 open reading frame 50
Tissue enriched
Detected in single
testis:
106.5
C14H10orf120
ENSSSCG00000010717
ENSG00000183559
Uncharacterized protein C10orf120 homolog
Tissue enriched
Detected in single
testis:
48.3
C15orf65
ENSSSCG00000032854
ENSG00000261652
Chromosome 15 open reading frame 65
Tissue enriched
Detected in some
testis:
31.2
C16orf46
ENSSSCG00000035388
ENSG00000166455
Chromosome 16 open reading frame 46
Tissue enriched
Detected in many
testis:
58.9
C16orf78
ENSSSCG00000002839
ENSG00000166152
Chromosome 16 open reading frame 78
Tissue enriched
Detected in single
testis:
49.1
C16orf86
ENSSSCG00000021711
ENSG00000159761
Chromosome 16 open reading frame 86
Tissue enriched
Detected in many
testis:
21.9
C16orf90
ENSSSCG00000007957
ENSG00000215131
Chromosome 16 open reading frame 90
Tissue enriched
Detected in some
testis:
38.9
C17orf53
ENSSSCG00000017364
ENSG00000125319
Chromosome 17 open reading frame 53
Tissue enriched
Detected in many
testis:
33.2
C17orf64
ENSSSCG00000017679
ENSG00000141371
Chromosome 17 open reading frame 64
Tissue enriched
Detected in single
testis:
39.4
C17orf98
ENSSSCG00000037753
ENSG00000275489
Chromosome 17 open reading frame 98
Tissue enriched
Detected in many
testis:
41.1
C19orf67
ENSSSCG00000013769
ENSG00000188032
Chromosome 19 open reading frame 67
Tissue enriched
Detected in many
testis:
38.0
C19orf71
ENSSSCG00000013482
ENSG00000183397
Chromosome 19 open reading frame 71
Tissue enriched
Detected in some
testis:
100.7
C1orf100
ENSSSCG00000010873
ENSG00000173728
Chromosome 1 open reading frame 100
Tissue enriched
Detected in single
testis:
57.5
C1orf141
ENSSSCG00000003803
ENSG00000203963
Chromosome 1 open reading frame 141
Tissue enriched
Detected in all
testis:
40.3
C1orf158
ENSSSCG00000003442
ENSG00000157330
Chromosome 1 open reading frame 158
Tissue enriched
Detected in some
testis:
83.9
C1orf185
ENSSSCG00000031188
ENSG00000204006
Chromosome 1 open reading frame 185
Tissue enriched
Detected in some
testis:
39.2
C1orf56
ENSSSCG00000006639
ENSG00000143443
Chromosome 1 open reading frame 56
Tissue enriched
Detected in some
testis:
180.1
C20orf141
ENSSSCG00000040428
ENSG00000258713
Chromosome 20 open reading frame 141
Tissue enriched
Detected in single
testis:
39.6
C22orf31
ENSSSCG00000025404
ENSG00000100249
Chromosome 22 open reading frame 31
Tissue enriched
Detected in single
testis:
35.2
C22orf46
ENSSSCG00000000057
ENSG00000184208
Chromosome 22 open reading frame 46
Tissue enriched
Detected in single
testis:
47.0
C2orf16
ENSSSCG00000008544
ENSG00000221843
Chromosome 2 open reading frame 16
Tissue enriched
Detected in some
testis:
34.4
C2orf73
ENSSSCG00000008410
ENSG00000177994
Chromosome 2 open reading frame 73
Tissue enriched
Detected in all
testis:
57.8
C2orf74
ENSSSCG00000008384
ENSG00000237651
Chromosome 2 open reading frame 74
Tissue enriched
Detected in some
testis:
65.9
C2orf78
ENSSSCG00000008299
ENSG00000187833
Chromosome 2 open reading frame 78
Tissue enriched
Detected in single
testis:
20.1
C3orf20
ENSSSCG00000040594
ENSG00000131379
Chromosome 3 open reading frame 20
Tissue enriched
Detected in all
testis:
62.1
C3orf22
ENSSSCG00000011626
ENSG00000180697
Chromosome 3 open reading frame 22
Tissue enriched
Detected in some
testis:
159.5
C3orf62
ENSSSCG00000036636
ENSG00000188315
Chromosome 3 open reading frame 62
Tissue enriched
Detected in some
testis:
22.7
C4orf45
ENSSSCG00000037757
ENSG00000164123
Chromosome 4 open reading frame 45
Tissue enriched
Detected in some
testis:
60.3
C6orf229
ENSSSCG00000001096
ENSG00000260286
Chromosome 6 open reading frame 229
Tissue enriched
Detected in some
testis:
32.3
C7orf31
ENSSSCG00000033313
ENSG00000153790
Chromosome 7 open reading frame 31
Tissue enriched
Detected in some
testis:
65.3
C8orf74
ENSSSCG00000009691
ENSG00000171060
Chromosome 8 open reading frame 74
Tissue enriched
Detected in some
testis:
30.1
C9orf131
ENSSSCG00000005298
ENSG00000174038
Chromosome 9 open reading frame 131
Tissue enriched
Detected in some
testis:
87.9
C9orf84
ENSSSCG00000005463
ENSG00000165181
Chromosome 9 open reading frame 84
Tissue enriched
Detected in some
testis:
15.0
CABS1
ENSSSCG00000039238
ENSG00000145309
Calcium binding protein, spermatid associated 1
Tissue enriched
Detected in single
testis:
107.2
CABYR
ENSSSCG00000003711
ENSG00000154040
Calcium-binding tyrosine phosphorylation-regulated protein isoform 1
Tissue enriched
Detected in many
testis:
111.2
CALR3
ENSSSCG00000013858
ENSG00000269058
Calreticulin 3
Tissue enriched
Detected in many
testis:
82.8
CAPN11
ENSSSCG00000001698
ENSG00000137225
Calpain 11
Tissue enriched
Detected in some
testis:
51.5
CAPZA3
ENSSSCG00000000589
ENSG00000177938
Capping actin protein of muscle Z-line alpha subunit 3
Tissue enriched
Detected in single
testis:
82.1
CATSPER1
ENSSSCG00000012959
ENSG00000175294
Cation channel sperm-associated protein 1
Tissue enriched
Detected in some
testis:
45.3
CATSPER3
ENSSSCG00000028294
ENSG00000152705
Cation channel sperm-associated protein 3
Tissue enriched
Detected in some
testis:
22.6
CATSPERB
ENSSSCG00000002442
ENSG00000133962
Cation channel sperm associated auxiliary subunit beta
Tissue enriched
Detected in some
testis:
33.3
CATSPERD
ENSSSCG00000013527
ENSG00000174898
Cation channel sperm associated auxiliary subunit delta
Tissue enriched
Detected in some
testis:
34.4
CBY3
ENSSSCG00000014021
ENSG00000204659
Chibby family member 3
Tissue enriched
Detected in some
testis:
25.8
CCDC105
ENSSSCG00000013834
ENSG00000160994
Coiled-coil domain containing 105
Tissue enriched
Detected in some
testis:
51.2
CCDC110
ENSSSCG00000015795
ENSG00000168491
Coiled-coil domain containing 110
Tissue enriched
Detected in many
testis:
65.6
CCDC136
ENSSSCG00000016579
ENSG00000128596
Coiled-coil domain containing 136
Tissue enriched
Detected in all
testis:
85.8
CCDC150
ENSSSCG00000016069
ENSG00000144395
Coiled-coil domain containing 150
Tissue enriched
Detected in all
testis:
63.2
CCDC172
ENSSSCG00000010656
ENSG00000182645
Coiled-coil domain containing 172
Tissue enriched
Detected in single
testis:
26.2
CCDC178
ENSSSCG00000038703
ENSG00000166960
Coiled-coil domain containing 178
Tissue enriched
Detected in some
testis:
33.9
CCDC182
ENSSSCG00000017620
ENSG00000166329
Coiled-coil domain containing 182
Tissue enriched
Detected in single
testis:
58.5
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