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Gene name
Human disease related genes
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UMAP gene cluster
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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1175 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
RFX8
ENSSSCG00000008165
ENSG00000196460
RFX family member 8, lacking RFX DNA binding domain
Tissue enriched
Detected in single
testis:
15.6
RIPPLY1
ENSSSCG00000033276
ENSG00000147223
Ripply transcriptional repressor 1
Tissue enriched
Detected in many
epididymis:
65.9
RNASE13
ENSSSCG00000023519
ENSG00000206150
Ribonuclease A family member 13 (inactive)
Tissue enriched
Detected in some
epididymis:
83.0
RNF151
ENSSSCG00000034728
ENSG00000179580
Ring finger protein 151
Tissue enriched
Detected in single
testis:
66.9
RNF17
ENSSSCG00000009572
ENSG00000132972
Ring finger protein 17
Tissue enriched
Detected in some
testis:
40.9
RNF25
ENSSSCG00000016202
ENSG00000163481
Ring finger protein 25
Tissue enriched
Detected in all
testis:
63.8
RNF32
ENSSSCG00000016414
ENSG00000105982
Ring finger protein 32
Tissue enriched
Detected in all
testis:
56.1
RPL10L
ENSSSCG00000005001
ENSG00000165496
Ribosomal protein L10 like
Tissue enriched
Detected in some
testis:
64.8
RSPH6A
ENSSSCG00000040714
ENSG00000104941
Radial spoke head 6 homolog A
Tissue enriched
Detected in some
testis:
48.2
S100A13
ENSSSCG00000038991
ENSG00000189171
S100 calcium binding protein A13
Tissue enriched
Detected in all
male glands:
118.5
SAXO1
ENSSSCG00000040408
ENSG00000155875
Stabilizer of axonemal microtubules 1
Tissue enriched
Detected in single
testis:
67.7
SAYSD1
ENSSSCG00000033246
ENSG00000112167
SAYSVFN motif domain containing 1
Tissue enriched
Detected in all
testis:
83.1
SCN11A
ENSSSCG00000029419
ENSG00000168356
Sodium voltage-gated channel alpha subunit 11
Tissue enriched
Detected in some
testis:
17.3
SCP2D1
ENSSSCG00000007099
ENSG00000132631
SCP2 sterol binding domain containing 1
Tissue enriched
Detected in single
testis:
80.7
SEL1L2
ENSSSCG00000007078
ENSG00000101251
SEL1L2 ERAD E3 ligase adaptor subunit
Tissue enriched
Detected in some
testis:
31.9
SELENOV
ENSSSCG00000002986
ENSG00000186838
Selenoprotein V
Tissue enriched
Detected in some
testis:
75.7
SEPT12
ENSSSCG00000007933
ENSG00000140623
Septin-12
Tissue enriched
Detected in many
testis:
63.0
SEPT14
ENSSSCG00000007751
ENSG00000154997
Septin 14
Tissue enriched
Detected in some
testis:
23.5
SHCBP1L
ENSSSCG00000026983
ENSG00000157060
SHC binding and spindle associated 1 like
Tissue enriched
Detected in many
testis:
77.2
SKOR2
ENSSSCG00000005767
ENSG00000215474
SKI family transcriptional corepressor 2
Tissue enriched
Detected in some
testis:
30.9
SLC12A2
ENSSSCG00000014255
ENSG00000064651
Solute carrier family 12 member 2
Tissue enriched
Detected in many
male glands:
217.5
SLC22A14
ENSSSCG00000011255
ENSG00000144671
Solute carrier family 22 member 14
Tissue enriched
Detected in many
testis:
27.2
SLC25A31
ENSSSCG00000009078
ENSG00000151475
Solute carrier family 25 member 31
Tissue enriched
Detected in single
testis:
25.8
SLC26A8
ENSSSCG00000001555
ENSG00000112053
Solute carrier family 26 member 8
Tissue enriched
Detected in single
testis:
76.6
SLC28A3
ENSSSCG00000010960
ENSG00000197506
Solute carrier family 28 member 3
Tissue enriched
Detected in some
male glands:
65.7
SLC30A2
ENSSSCG00000026386
ENSG00000158014
Zinc transporter 2
Tissue enriched
Detected in some
male glands:
158.7
SLC46A2
ENSSSCG00000005472
ENSG00000119457
Solute carrier family 46 member 2
Tissue enriched
Detected in many
epididymis:
84.4
SLC5A8
ENSSSCG00000000871
ENSG00000256870
Sodium-coupled monocarboxylate transporter 1
Tissue enriched
Detected in all
male glands:
106.7
SLC9C1
ENSSSCG00000023918
ENSG00000172139
Solute carrier family 9 member C1
Tissue enriched
Detected in some
testis:
35.6
SLCO6A1
ENSSSCG00000014183
ENSG00000205359
Solute carrier organic anion transporter family member 6A1
Tissue enriched
Detected in some
testis:
28.9
SMC1B
ENSSSCG00000032971
ENSG00000077935
Structural maintenance of chromosomes 1B
Tissue enriched
Detected in some
testis:
44.8
SMCO2
ENSSSCG00000000550
ENSG00000165935
Single-pass membrane protein with coiled-coil domains 2
Tissue enriched
Detected in single
testis:
59.8
SMCP
ENSSSCG00000006594
ENSG00000163206
Sperm mitochondrial-associated cysteine-rich protein
Tissue enriched
Detected in single
testis:
196.3
SMKR1
ENSSSCG00000025967
ENSG00000240204
Small lysine rich protein 1
Tissue enriched
Detected in many
testis:
165.1
SOX30
ENSSSCG00000017051
ENSG00000039600
SRY-box 30
Tissue enriched
Detected in single
testis:
49.5
SPA17
ENSSSCG00000015197
ENSG00000064199
Sperm autoantigenic protein 17
Tissue enriched
Detected in many
testis:
61.1
SPACA1
ENSSSCG00000004308
ENSG00000118434
Sperm acrosome membrane-associated protein 1 precursor
Tissue enriched
Detected in some
testis:
72.6
SPACA3
ENSSSCG00000017726
ENSG00000141316
Sperm acrosome membrane-associated protein 3 precursor
Tissue enriched
Detected in some
testis:
52.3
SPACA4
ENSSSCG00000025441
ENSG00000177202
Sperm acrosome membrane-associated protein 4 precursor
Tissue enriched
Detected in some
testis:
101.4
SPACA5
ENSSSCG00000012285
ENSG00000171478,ENSG00000171489
Sperm acrosome-associated protein 5 precursor
Tissue enriched
Detected in single
testis:
29.0
SPAG11
ENSSSCG00000029743
Sperm associated antigen 11
Tissue enriched
Detected in some
epididymis:
234.6
SPAG4
ENSSSCG00000007305
ENSG00000061656
Sperm associated antigen 4
Tissue enriched
Detected in many
testis:
42.4
SPAG5
ENSSSCG00000017758
ENSG00000076382
Sperm-associated antigen 5
Tissue enriched
Detected in some
testis:
36.9
SPATA16
ENSSSCG00000038177
ENSG00000144962
Spermatogenesis-associated protein 16
Tissue enriched
Detected in some
testis:
72.2
SPATA19
ENSSSCG00000025612
ENSG00000166118
Spermatogenesis-associated protein 19, mitochondrial
Tissue enriched
Detected in single
testis:
96.9
SPATA20
ENSSSCG00000017565
ENSG00000006282
Spermatogenesis-associated protein 20
Tissue enriched
Detected in many
testis:
59.3
SPATA22
ENSSSCG00000029709
ENSG00000141255
Spermatogenesis-associated protein 22
Tissue enriched
Detected in some
testis:
62.2
SPATA3
ENSSSCG00000016269
ENSG00000173699
Spermatogenesis-associated protein 3
Tissue enriched
Detected in some
testis:
231.7
SPATA45
ENSSSCG00000015591
ENSG00000185523
Spermatogenesis associated 45
Tissue enriched
Detected in many
testis:
77.2
SPATA48
ENSSSCG00000015628
ENSG00000164500
Spermatogenesis associated 48
Tissue enriched
Detected in some
testis:
30.7
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