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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
Class
Biological process
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Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
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14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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1175 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SPATA6
ENSSSCG00000003881
ENSG00000132122
Spermatogenesis-associated protein 6
Tissue enriched
Detected in all
testis:
100.5
SPATA7
ENSSSCG00000002424
ENSG00000042317
Spermatogenesis-associated protein 7
Tissue enriched
Detected in all
testis:
114.1
SPATA9
ENSSSCG00000030114
ENSG00000145757
Spermatogenesis-associated protein 9
Tissue enriched
Detected in some
testis:
41.3
SPATC1
ENSSSCG00000005923
ENSG00000186583
Spermatogenesis and centriole associated 1
Tissue enriched
Detected in some
testis:
107.9
SPATC1L
ENSSSCG00000029847
ENSG00000160284
Spermatogenesis and centriole associated 1 like
Tissue enriched
Detected in some
testis:
44.4
SPDYA
ENSSSCG00000008538
ENSG00000163806
Speedy protein A
Tissue enriched
Detected in all
testis:
52.2
SPEM2
ENSSSCG00000024584
ENSG00000184560
SPEM family member 2
Tissue enriched
Detected in some
testis:
148.7
SPEM3
ENSSSCG00000040543
ENSG00000283439
SPEM family member 3
Tissue enriched
Detected in single
testis:
90.6
SPERT
ENSSSCG00000009417
ENSG00000174015
Spermatid associated
Tissue enriched
Detected in many
testis:
115.1
SPESP1
ENSSSCG00000032244
ENSG00000258484
Sperm equatorial segment protein 1 precursor
Tissue enriched
Detected in single
testis:
65.3
SPINK14
ENSSSCG00000033173
ENSG00000196800
Serine peptidase inhibitor, Kazal type 14 (putative)
Tissue enriched
Detected in some
ductus deferens:
155.6
SPINK6
ENSSSCG00000039674
ENSG00000178172
Serine peptidase inhibitor, Kazal type 6
Tissue enriched
Detected in many
ductus deferens:
23.1
SPMI
ENSSSCG00000002977
Seminal plasma sperm motility inhibitor precursor
Tissue enriched
Detected in some
male glands:
2013.1
SPPL2C
ENSSSCG00000017314
ENSG00000185294
Signal peptide peptidase like 2C
Tissue enriched
Detected in single
testis:
54.2
SPTY2D1
ENSSSCG00000013361
ENSG00000179119
SPT2 chromatin protein domain containing 1
Tissue enriched
Detected in all
male glands:
56.6
SPZ1
ENSSSCG00000014122
ENSG00000164299
Spermatogenic leucine zipper 1
Tissue enriched
Detected in single
testis:
65.5
SRRM5
ENSSSCG00000032581
ENSG00000226763
Serine/arginine repetitive matrix 5
Tissue enriched
Detected in single
testis:
42.6
SSMEM1
ENSSSCG00000016562
ENSG00000165120
Serine rich single-pass membrane protein 1
Tissue enriched
Detected in some
testis:
49.2
ST3GAL4
ENSSSCG00000015232
ENSG00000110080
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 4
Tissue enriched
Detected in many
male glands:
175.5
STAG3
ENSSSCG00000007650
ENSG00000066923
Stromal antigen 3
Tissue enriched
Detected in some
testis:
83.3
STARD6
ENSSSCG00000004530
ENSG00000174448
StAR related lipid transfer domain containing 6
Tissue enriched
Detected in some
testis:
57.3
STAT4
ENSSSCG00000016059
ENSG00000138378
Signal transducer and activator of transcription 4
Tissue enriched
Detected in some
testis:
72.7
STK36
ENSSSCG00000026964
ENSG00000163482
Serine/threonine kinase 36
Tissue enriched
Detected in all
testis:
65.2
STKLD1
ENSSSCG00000031407
ENSG00000198870
Serine/threonine kinase like domain containing 1
Tissue enriched
Detected in many
testis:
35.6
STOML1
ENSSSCG00000001913
ENSG00000067221
Stomatin like 1
Tissue enriched
Detected in all
epididymis:
44.6
STPG1
ENSSSCG00000003541
ENSG00000001460
Sperm tail PG-rich repeat containing 1
Tissue enriched
Detected in many
testis:
73.2
STPG4
ENSSSCG00000008432
ENSG00000239605
Sperm-tail PG-rich repeat containing 4
Tissue enriched
Detected in many
testis:
91.0
SULT1C3
ENSSSCG00000028691
ENSG00000196228
Sulfotransferase family 1C member 3
Tissue enriched
Detected in some
testis:
312.8
SUN3
ENSSSCG00000022557
ENSG00000164744
Sad1 and UNC84 domain containing 3
Tissue enriched
Detected in all
testis:
51.6
SUN5
ENSSSCG00000007256
ENSG00000167098
SUN domain-containing protein 5
Tissue enriched
Detected in single
testis:
41.3
SYCE1
ENSSSCG00000010779
ENSG00000171772
Synaptonemal complex central element protein 1
Tissue enriched
Detected in all
testis:
65.4
SYCE2
ENSSSCG00000013740
ENSG00000161860
Synaptonemal complex central element protein 2
Tissue enriched
Detected in all
testis:
57.4
SYCE3
ENSSSCG00000000963
ENSG00000217442
Synaptonemal complex central element protein 3
Tissue enriched
Detected in all
testis:
63.3
SYCP1
ENSSSCG00000006750
ENSG00000198765
Synaptonemal complex protein 1
Tissue enriched
Detected in single
testis:
34.8
SYCP3
ENSSSCG00000000863
ENSG00000139351
Synaptonemal complex protein 3
Tissue enriched
Detected in single
testis:
76.4
SYNGR4
ENSSSCG00000003131
ENSG00000105467
Synaptogyrin 4
Tissue enriched
Detected in some
testis:
100.7
TAAR5
ENSSSCG00000004185
ENSG00000135569
Trace amine associated receptor 5
Tissue enriched
Detected in single
testis:
3.3
TBC1D21
ENSSSCG00000001915
ENSG00000167139
TBC1 domain family member 21
Tissue enriched
Detected in some
testis:
36.9
TCP11
ENSSSCG00000001535
ENSG00000124678
T-complex 11
Tissue enriched
Detected in some
testis:
77.1
TCTE3
ENSSSCG00000004009
ENSG00000184786
T-complex-associated-testis-expressed 3
Tissue enriched
Detected in many
testis:
50.5
TDRD1
ENSSSCG00000021075
ENSG00000095627
Tudor domain containing 1
Tissue enriched
Detected in some
testis:
41.8
TDRD5
ENSSSCG00000015527
ENSG00000162782
Tudor domain containing 5
Tissue enriched
Detected in some
testis:
31.9
TDRD6
ENSSSCG00000021218
ENSG00000180113
Tudor domain containing 6
Tissue enriched
Detected in single
testis:
39.8
TEDDM1
ENSSSCG00000015546
ENSG00000203730
Transmembrane epididymal protein 1
Tissue enriched
Detected in some
epididymis:
58.3
TEKT2
ENSSSCG00000003633
ENSG00000092850
Tektin 2
Tissue enriched
Detected in some
testis:
73.7
TEKT3
ENSSSCG00000018028
ENSG00000125409
Tektin 3
Tissue enriched
Detected in some
testis:
68.4
TEKT5
ENSSSCG00000007904
ENSG00000153060
Tektin 5
Tissue enriched
Detected in single
testis:
35.7
TEPP
ENSSSCG00000002809
ENSG00000159648
Testis, prostate and placenta-expressed protein
Tissue enriched
Detected in some
testis:
48.8
TEX12
ENSSSCG00000022445
ENSG00000150783
Testis expressed 12
Tissue enriched
Detected in some
testis:
14.2
TEX14
ENSSSCG00000017645
ENSG00000121101
Testis expressed 14, intercellular bridge forming factor
Tissue enriched
Detected in many
testis:
41.3
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