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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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409 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
OLIG2
ENSSSCG00000012039
ENSG00000205927
Oligodendrocyte transcription factor 2
Tissue enriched
Detected in single
brain:
35.4
OMG
ENSSSCG00000017751
ENSG00000126861
Oligodendrocyte myelin glycoprotein
Tissue enriched
Detected in some
brain:
76.0
OPALIN
ENSSSCG00000010506
ENSG00000197430
Opalin
Tissue enriched
Detected in single
brain:
154.8
OPCML
ENSSSCG00000037534
ENSG00000183715
Opioid binding protein/cell adhesion molecule like
Tissue enriched
Detected in some
brain:
42.1
OPRM1
ENSSSCG00000004074
ENSG00000112038
Mu-type opioid receptor
Tissue enriched
Detected in some
brain:
11.7
OTOF
ENSSSCG00000037751
ENSG00000115155
Otoferlin
Tissue enriched
Detected in some
brain:
15.1
OTP
ENSSSCG00000014099
ENSG00000171540
Orthopedia homeobox
Tissue enriched
Detected in single
brain:
25.1
OXT
ENSSSCG00000007164
ENSG00000101405
Oxytocin-neurophysin 1 Oxytocin Neurophysin 1
Tissue enriched
Detected in some
brain:
257.2
PAK1
ENSSSCG00000014878
ENSG00000149269
P21 (RAC1) activated kinase 1
Tissue enriched
Detected in all
brain:
75.9
PDE1B
ENSSSCG00000000297
ENSG00000123360
Phosphodiesterase 1B
Tissue enriched
Detected in many
brain:
80.9
PDZD4
ENSSSCG00000012785
ENSG00000067840
PDZ domain containing 4
Tissue enriched
Detected in some
brain:
40.9
PHACTR1
ENSSSCG00000001052
ENSG00000112137
Phosphatase and actin regulator 1
Tissue enriched
Detected in many
brain:
66.8
PHACTR3
ENSSSCG00000007528
ENSG00000087495
Phosphatase and actin regulator 3
Tissue enriched
Detected in some
brain:
26.9
PHF24
ENSSSCG00000005296
ENSG00000122733
PHD finger protein 24
Tissue enriched
Detected in some
brain:
39.7
PHYHIP
ENSSSCG00000009621
ENSG00000168490
Phytanoyl-CoA 2-hydroxylase interacting protein
Tissue enriched
Detected in many
brain:
63.3
PIANP
ENSSSCG00000000692
ENSG00000139200
PILR alpha associated neural protein
Tissue enriched
Detected in some
brain:
52.6
PLP1
ENSSSCG00000012536
ENSG00000123560
Myelin proteolipid protein
Tissue enriched
Detected in some
brain:
604.9
PLPPR2
ENSSSCG00000013620
ENSG00000105520
Phospholipid phosphatase related 2
Tissue enriched
Detected in all
brain:
43.1
PLPPR4
ENSSSCG00000006875
ENSG00000117600
Phospholipid phosphatase related 4
Tissue enriched
Detected in some
brain:
62.7
PMCH
ENSSSCG00000000858
ENSG00000183395
Pro-MCH precursor
Tissue enriched
Detected in some
brain:
53.1
PMP2
ENSSSCG00000036441
ENSG00000147588
Myelin P2 protein
Tissue enriched
Detected in some
brain:
159.9
PNMA2
ENSSSCG00000009659
ENSG00000240694
PNMA family member 2
Tissue enriched
Detected in some
brain:
23.7
POU3F4
ENSSSCG00000012454
ENSG00000196767
POU class 3 homeobox 4
Tissue enriched
Detected in some
brain:
10.6
PPP2R2C
ENSSSCG00000008712
ENSG00000074211
Protein phosphatase 2 regulatory subunit Bgamma
Tissue enriched
Detected in some
brain:
43.6
PRDM12
ENSSSCG00000005703
ENSG00000130711
PR/SET domain 12
Tissue enriched
Detected in single
brain:
13.3
PRKAR1B
ENSSSCG00000007542
ENSG00000188191
Protein kinase cAMP-dependent type I regulatory subunit beta
Tissue enriched
Detected in many
brain:
37.7
PRKCG
ENSSSCG00000003256
ENSG00000126583
Protein kinase C gamma
Tissue enriched
Detected in some
brain:
56.1
PROK1
ENSSSCG00000006805
ENSG00000143125
Prokineticin-1 precursor
Tissue enriched
Detected in some
brain:
15.9
PRPH
ENSSSCG00000000195
ENSG00000135406
Peripherin
Tissue enriched
Detected in many
brain:
87.3
PRSS56
ENSSSCG00000016286
ENSG00000237412
Serine protease 56
Tissue enriched
Detected in some
brain:
25.4
PTPRT
ENSSSCG00000038990
ENSG00000196090
Protein tyrosine phosphatase, receptor type T
Tissue enriched
Detected in many
brain:
22.5
PVALB
ENSSSCG00000000138
ENSG00000100362
Parvalbumin alpha
Tissue enriched
Detected in some
brain:
97.1
RAB6B
ENSSSCG00000036503
ENSG00000154917
RAB6B, member RAS oncogene family
Tissue enriched
Detected in many
brain:
57.2
RASD2
ENSSSCG00000031155
ENSG00000100302
RASD family member 2
Tissue enriched
Detected in many
brain:
82.9
RASL10A
ENSSSCG00000009977
ENSG00000100276
RAS like family 10 member A
Tissue enriched
Detected in some
brain:
26.4
RBFOX3
ENSSSCG00000039498
ENSG00000167281
RNA binding fox-1 homolog 3
Tissue enriched
Detected in some
brain:
43.4
RELL2
ENSSSCG00000014389
ENSG00000164620
RELT like 2
Tissue enriched
Detected in some
brain:
34.5
RET
ENSSSCG00000010199
ENSG00000165731
Ret proto-oncogene
Tissue enriched
Detected in many
brain:
52.4
RGS17
ENSSSCG00000004075
ENSG00000091844
Regulator of G protein signaling 17
Tissue enriched
Detected in some
brain:
16.3
RHBDL2
ENSSSCG00000003651
ENSG00000158315
Rhomboid-related protein 2
Tissue enriched
Detected in all
brain:
54.9
RIMS4
ENSSSCG00000021453
ENSG00000101098
Regulating synaptic membrane exocytosis 4
Tissue enriched
Detected in some
brain:
22.7
RND2
ENSSSCG00000029460
ENSG00000108830
Rho family GTPase 2
Tissue enriched
Detected in all
brain:
38.0
RNF208
ENSSSCG00000005858
ENSG00000212864
Ring finger protein 208
Tissue enriched
Detected in many
brain:
28.7
RPRML
ENSSSCG00000017320
ENSG00000179673
Reprimo like
Tissue enriched
Detected in some
brain:
82.7
RUNDC3A
ENSSSCG00000017359
ENSG00000108309
RUN domain containing 3A
Tissue enriched
Detected in some
brain:
60.2
S100A5
ENSSSCG00000006577
ENSG00000196420
S100 calcium binding protein A5
Tissue enriched
Detected in some
brain:
19.4
SCN1A
ENSSSCG00000024204
ENSG00000144285
Sodium voltage-gated channel alpha subunit 1
Tissue enriched
Detected in some
brain:
46.9
SCN2A
ENSSSCG00000015905
ENSG00000136531
Sodium voltage-gated channel alpha subunit 2
Tissue enriched
Detected in some
brain:
44.5
SCN2B
ENSSSCG00000021651
ENSG00000149575
Sodium voltage-gated channel beta subunit 2
Tissue enriched
Detected in some
brain:
47.5
SCN3B
ENSSSCG00000024299
ENSG00000166257
Sodium voltage-gated channel beta subunit 3
Tissue enriched
Detected in some
brain:
78.9
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