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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
Class
Cancers
Cardiovascular diseases
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Digestive system diseases
Endocrine and metabolic diseases
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Other congenital disorders
Other diseases
Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
MT
Unmapped
X
Y
External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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409 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SEPT4
ENSSSCG00000017643
ENSG00000108387
Septin 4
Tissue enriched
Detected in many
brain:
117.5
SFXN5
ENSSSCG00000008307
ENSG00000144040
Sideroflexin 5
Tissue enriched
Detected in many
brain:
39.0
SH2D5
ENSSSCG00000003509
ENSG00000189410
SH2 domain containing 5
Tissue enriched
Detected in some
brain:
21.4
SHISA9
ENSSSCG00000032878
ENSG00000237515
Shisa family member 9
Tissue enriched
Detected in some
brain:
51.9
SKOR1
ENSSSCG00000004956
ENSG00000188779
SKI family transcriptional corepressor 1
Tissue enriched
Detected in some
brain:
14.5
SLAIN1
ENSSSCG00000009475
ENSG00000139737
SLAIN motif family member 1
Tissue enriched
Detected in many
brain:
95.7
SLC17A6
ENSSSCG00000013343
ENSG00000091664
Solute carrier family 17 member 6
Tissue enriched
Detected in some
brain:
31.0
SLC18A2
ENSSSCG00000020671
ENSG00000165646
Synaptic vesicular amine transporter
Tissue enriched
Detected in many
brain:
65.9
SLC18A3
ENSSSCG00000022274
ENSG00000187714
Solute carrier family 18 member A3
Tissue enriched
Detected in some
brain:
56.8
SLC1A2
ENSSSCG00000013296
ENSG00000110436
Solute carrier family 1 member 2
Tissue enriched
Detected in some
brain:
89.6
SLC1A3
ENSSSCG00000016841
ENSG00000079215
Excitatory amino acid transporter 1 isoform 4
Tissue enriched
Detected in many
brain:
95.9
SLC26A11
ENSSSCG00000021040
ENSG00000181045
Sodium-independent sulfate anion transporter
Tissue enriched
Detected in many
brain:
64.5
SLC26A5
ENSSSCG00000015425
ENSG00000170615
Prestin
Tissue enriched
Detected in some
brain:
16.9
SLC32A1
ENSSSCG00000007348
ENSG00000101438
Solute carrier family 32 member 1
Tissue enriched
Detected in some
brain:
37.0
SLC6A3
ENSSSCG00000017121
ENSG00000142319
Solute carrier family 6 member 3
Tissue enriched
Detected in some
brain:
106.4
SLC6A5
ENSSSCG00000037705
ENSG00000165970
Solute carrier family 6 member 5
Tissue enriched
Detected in single
brain:
30.8
SLC8A2
ENSSSCG00000029567
ENSG00000118160
Solute carrier family 8 member A2
Tissue enriched
Detected in many
brain:
33.4
SLIT1
ENSSSCG00000010512
ENSG00000187122
Slit guidance ligand 1
Tissue enriched
Detected in some
brain:
24.0
SP9
ENSSSCG00000036172
ENSG00000217236
Sp9 transcription factor
Tissue enriched
Detected in some
brain:
30.7
SSPO
ENSSSCG00000039661
ENSG00000197558
SCO-spondin
Tissue enriched
Detected in some
brain:
35.0
ST18
ENSSSCG00000006266
ENSG00000147488
ST18, C2H2C-type zinc finger
Tissue enriched
Detected in some
brain:
41.0
STMN4
ENSSSCG00000009662
ENSG00000015592
Stathmin 4
Tissue enriched
Detected in some
brain:
106.0
STX1A
ENSSSCG00000007772
ENSG00000106089
Syntaxin 1A
Tissue enriched
Detected in many
brain:
49.1
SULT4A1
ENSSSCG00000000026
ENSG00000130540
Sulfotransferase family 4A member 1
Tissue enriched
Detected in some
brain:
30.0
SYN1
ENSSSCG00000012276
ENSG00000008056
Synapsin-1
Tissue enriched
Detected in many
brain:
71.7
SYN2
ENSSSCG00000023225
ENSG00000157152
Synapsin II
Tissue enriched
Detected in many
brain:
57.8
SYNDIG1
ENSSSCG00000007130
ENSG00000101463
Synapse differentiation inducing 1
Tissue enriched
Detected in some
brain:
24.5
SYNGR3
ENSSSCG00000008036
ENSG00000127561
Synaptogyrin 3
Tissue enriched
Detected in some
brain:
27.9
SYNPR
ENSSSCG00000027617
ENSG00000163630
Synaptoporin
Tissue enriched
Detected in some
brain:
65.3
SYT12
ENSSSCG00000024837
ENSG00000173227
Synaptotagmin 12
Tissue enriched
Detected in many
brain:
22.5
SYT2
ENSSSCG00000010926
ENSG00000143858
Synaptotagmin 2
Tissue enriched
Detected in some
brain:
29.0
SYT6
ENSSSCG00000006758
ENSG00000134207
Synaptotagmin 6
Tissue enriched
Detected in some
brain:
25.2
TAC1
ENSSSCG00000023592
ENSG00000006128
Tachykinin precursor 1
Tissue enriched
Detected in some
brain:
100.8
TBR1
ENSSSCG00000015891
ENSG00000136535
T-box, brain 1
Tissue enriched
Detected in some
brain:
30.3
TFAP2D
ENSSSCG00000001744
ENSG00000008197
Transcription factor AP-2 delta
Tissue enriched
Detected in some
brain:
22.4
THEM6
ENSSSCG00000032063
ENSG00000130193
Thioesterase superfamily member 6
Tissue enriched
Detected in some
brain:
14.1
TLX3
ENSSSCG00000016999
ENSG00000164438
T cell leukemia homeobox 3
Tissue enriched
Detected in some
brain:
33.8
TMEFF2
ENSSSCG00000016064
ENSG00000144339
Transmembrane protein with EGF like and two follistatin like domains 2
Tissue enriched
Detected in many
brain:
33.4
TMEM132B
ENSSSCG00000009754
ENSG00000139364
Transmembrane protein 132B
Tissue enriched
Detected in some
brain:
23.7
TMEM144
ENSSSCG00000008874
ENSG00000164124
Transmembrane protein 144
Tissue enriched
Detected in many
brain:
46.2
TMEM178A
ENSSSCG00000024293
ENSG00000152154
Transmembrane protein 178A
Tissue enriched
Detected in many
brain:
49.0
TMEM88B
ENSSSCG00000034013
ENSG00000205116
Transmembrane protein 88B
Tissue enriched
Detected in all
brain:
47.0
TRIM59
ENSSSCG00000011732
ENSG00000213186
Tripartite motif containing 59
Tissue enriched
Detected in all
brain:
46.5
TRPC5
ENSSSCG00000012587
ENSG00000072315
Short transient receptor potential channel 5
Tissue enriched
Detected in some
brain:
16.3
TTBK1
ENSSSCG00000001664
ENSG00000146216
Tau tubulin kinase 1
Tissue enriched
Detected in some
brain:
18.7
TUBB3
ENSSSCG00000002639
ENSG00000258947
Tubulin beta 3 class III
Tissue enriched
Detected in some
brain:
69.0
TUBB4A
ENSSSCG00000013545
ENSG00000104833
Tubulin beta 4A class IVa
Tissue enriched
Detected in some
brain:
146.9
UCMA
ENSSSCG00000038864
ENSG00000165623
Upper zone of growth plate and cartilage matrix associated
Tissue enriched
Detected in some
brain:
30.6
UNC13C
ENSSSCG00000004614
ENSG00000137766
Unc-13 homolog C
Tissue enriched
Detected in many
brain:
98.8
UNCX
ENSSSCG00000007555
ENSG00000164853
UNC homeobox
Tissue enriched
Detected in some
brain:
21.1
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