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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Subclass
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Biological process
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
15
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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409 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
GOLGA7
ENSSSCG00000020715
ENSG00000147533
Golgin A7
Tissue enriched
Detected in all
brain:
83.6
GPC5
ENSSSCG00000031946
ENSG00000179399
Glypican 5
Tissue enriched
Detected in many
brain:
18.5
GPR101
ENSSSCG00000040432
ENSG00000165370
G protein-coupled receptor 101
Tissue enriched
Detected in single
brain:
22.3
GPR139
ENSSSCG00000007862
ENSG00000180269
G protein-coupled receptor 139
Tissue enriched
Detected in single
brain:
6.6
GPR151
ENSSSCG00000014415
ENSG00000173250
G protein-coupled receptor 151
Tissue enriched
Detected in single
brain:
12.7
GPR22
ENSSSCG00000015442
ENSG00000172209
G protein-coupled receptor 22
Tissue enriched
Detected in many
brain:
39.3
GPR3
ENSSSCG00000003576
ENSG00000181773
G-protein coupled receptor 3
Tissue enriched
Detected in some
brain:
10.6
GPR37
ENSSSCG00000016599
ENSG00000170775
G protein-coupled receptor 37
Tissue enriched
Detected in some
brain:
64.7
GPR50
ENSSSCG00000023462
ENSG00000102195
G protein-coupled receptor 50
Tissue enriched
Detected in single
brain:
13.4
GPR75
ENSSSCG00000008413
ENSG00000119737
Probable G-protein coupled receptor 75
Tissue enriched
Detected in many
brain:
56.9
GPR88
ENSSSCG00000035602
ENSG00000181656
G protein-coupled receptor 88
Tissue enriched
Detected in some
brain:
89.0
GRIA1
ENSSSCG00000022569
ENSG00000155511
Glutamate ionotropic receptor AMPA type subunit 1
Tissue enriched
Detected in some
brain:
64.7
GRIA2
ENSSSCG00000024685
ENSG00000120251
Glutamate ionotropic receptor AMPA type subunit 2
Tissue enriched
Detected in some
brain:
47.1
GRID2IP
ENSSSCG00000037070
ENSG00000215045
Grid2 interacting protein
Tissue enriched
Detected in some
brain:
17.9
GRIN2A
ENSSSCG00000031290
ENSG00000183454
Glutamate ionotropic receptor NMDA type subunit 2A
Tissue enriched
Detected in some
brain:
33.0
GRIN2B
ENSSSCG00000000614
ENSG00000273079
Glutamate ionotropic receptor NMDA type subunit 2B
Tissue enriched
Detected in some
brain:
35.0
GRM1
ENSSSCG00000004119
ENSG00000152822
Glutamate metabotropic receptor 1
Tissue enriched
Detected in some
brain:
33.4
GRM3
ENSSSCG00000015395
ENSG00000198822
Glutamate metabotropic receptor 3
Tissue enriched
Detected in some
brain:
25.4
GRM4
ENSSSCG00000001523
ENSG00000124493
Glutamate metabotropic receptor 4
Tissue enriched
Detected in some
brain:
76.1
GRM5
ENSSSCG00000029865
ENSG00000168959
Glutamate metabotropic receptor 5
Tissue enriched
Detected in some
brain:
27.7
HAPLN2
ENSSSCG00000006478
ENSG00000132702
Hyaluronan and proteoglycan link protein 2
Tissue enriched
Detected in all
brain:
73.3
HCN2
ENSSSCG00000033442
ENSG00000099822
Hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2
Tissue enriched
Detected in many
brain:
31.1
HCRT
ENSSSCG00000017410
ENSG00000161610
Orexin Orexin-A Orexin-B
Tissue enriched
Detected in some
brain:
66.0
HPCA
ENSSSCG00000032664
ENSG00000121905
Neuron-specific calcium-binding protein hippocalcin
Tissue enriched
Detected in some
brain:
171.1
HPCAL4
ENSSSCG00000023460
ENSG00000116983
Hippocalcin-like protein 4
Tissue enriched
Detected in some
brain:
65.9
HPDL
ENSSSCG00000003920
ENSG00000186603
4-hydroxyphenylpyruvate dioxygenase like
Tissue enriched
Detected in single
brain:
6.7
HRH3
ENSSSCG00000038578
ENSG00000101180
Histamine receptor H3
Tissue enriched
Detected in some
brain:
24.0
HS3ST4
ENSSSCG00000039406
ENSG00000182601
Heparan sulfate-glucosamine 3-sulfotransferase 4
Tissue enriched
Detected in some
brain:
17.4
HTR6
ENSSSCG00000025244
ENSG00000158748
5-hydroxytryptamine receptor 6
Tissue enriched
Detected in many
brain:
15.1
ICAM5
ENSSSCG00000013653
ENSG00000105376
Intercellular adhesion molecule 5
Tissue enriched
Detected in many
brain:
38.1
ID1
ENSSSCG00000037016
ENSG00000125968
DNA-binding protein inhibitor ID-1
Tissue enriched
Detected in all
brain:
58.7
IFITM10
ENSSSCG00000033809
ENSG00000244242
Interferon induced transmembrane protein 10
Tissue enriched
Detected in some
brain:
21.2
INPP5F
ENSSSCG00000010687
ENSG00000198825
Inositol polyphosphate-5-phosphatase F
Tissue enriched
Detected in many
brain:
124.7
IQCJ
ENSSSCG00000011728
ENSG00000214216
IQ motif containing J
Tissue enriched
Detected in some
brain:
27.4
JAKMIP3
ENSSSCG00000024633
ENSG00000188385
Janus kinase and microtubule interacting protein 3
Tissue enriched
Detected in many
brain:
19.2
KCNA6
ENSSSCG00000000717
ENSG00000151079
Potassium voltage-gated channel subfamily A member 6
Tissue enriched
Detected in some
brain:
63.3
KCND2
ENSSSCG00000016621
ENSG00000184408
Potassium voltage-gated channel subfamily D member 2
Tissue enriched
Detected in many
brain:
79.7
KCNG2
ENSSSCG00000005780
ENSG00000178342
Potassium voltage-gated channel modifier subfamily G member 2
Tissue enriched
Detected in many
brain:
28.3
KCNH3
ENSSSCG00000000203
ENSG00000135519
Potassium voltage-gated channel subfamily H member 3
Tissue enriched
Detected in some
brain:
29.4
KCNH7
ENSSSCG00000015898
ENSG00000184611
Potassium voltage-gated channel subfamily H member 7
Tissue enriched
Detected in some
brain:
35.7
KCNJ10
ENSSSCG00000031858
ENSG00000177807
Potassium voltage-gated channel subfamily J member 10
Tissue enriched
Detected in some
brain:
60.8
KCNJ9
ENSSSCG00000006393
ENSG00000162728
Potassium voltage-gated channel subfamily J member 9
Tissue enriched
Detected in some
brain:
24.1
KCNK15
ENSSSCG00000007377
ENSG00000124249
Potassium two pore domain channel subfamily K member 15
Tissue enriched
Detected in some
brain:
14.4
KCNK4
ENSSSCG00000013031
ENSG00000182450
Potassium two pore domain channel subfamily K member 4
Tissue enriched
Detected in some
brain:
15.4
KCNN1
ENSSSCG00000013892
ENSG00000105642
Potassium calcium-activated channel subfamily N member 1
Tissue enriched
Detected in some
brain:
15.5
KCNQ2
ENSSSCG00000031746
ENSG00000075043
Potassium voltage-gated channel subfamily Q member 2
Tissue enriched
Detected in some
brain:
26.5
KCNQ3
ENSSSCG00000005953
ENSG00000184156
Potassium voltage-gated channel subfamily Q member 3
Tissue enriched
Detected in some
brain:
36.7
KCNT1
ENSSSCG00000005762
ENSG00000107147
Potassium sodium-activated channel subfamily T member 1
Tissue enriched
Detected in many
brain:
40.5
KCNV1
ENSSSCG00000006021
ENSG00000164794
Potassium voltage-gated channel modifier subfamily V member 1
Tissue enriched
Detected in some
brain:
25.4
KIF5A
ENSSSCG00000000439
ENSG00000155980
Kinesin family member 5A
Tissue enriched
Detected in many
brain:
86.8
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