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Keyword
Chromosome
1
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7
8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MMP17
ENSSSCG00000024236
ENSG00000198598
Matrix metallopeptidase 17
Group enriched
Detected in some
brain:
18.9
cornea:
6.5
lymphoid tissue:
12.5
pineal gland:
6.2
MMP19
ENSSSCG00000000368
ENSG00000123342
Matrix metallopeptidase 19
Tissue enhanced
Detected in many
liver:
39.5
ovary:
32.3
MMP2
ENSSSCG00000002829
ENSG00000087245
72 kDa type IV collagenase precursor
Tissue enhanced
Detected in all
cervix:
147.1
MMP20
ENSSSCG00000014983
ENSG00000137674
Matrix metalloproteinase-20
Tissue enhanced
Detected in some
gallbladder:
4.2
lens:
4.2
MMP23B
ENSSSCG00000003351
ENSG00000189409
Matrix metallopeptidase 23B
Tissue enhanced
Detected in many
cartilage:
53.6
MMP24
ENSSSCG00000040160
ENSG00000125966
Matrix metallopeptidase 24
Tissue enhanced
Detected in all
adrenal gland:
36.5
brain:
39.8
MMP25
ENSSSCG00000021569
ENSG00000008516
Matrix metallopeptidase 25
Tissue enhanced
Detected in many
lymphoid tissue:
20.0
stomach:
24.4
MMP27
ENSSSCG00000014984
ENSG00000137675
Matrix metallopeptidase 27
Group enriched
Detected in some
adipose tissue:
14.1
cartilage:
7.3
mouth:
24.1
skin:
14.9
MMP28
ENSSSCG00000034440
ENSG00000271447
Matrix metallopeptidase 28
Tissue enhanced
Detected in many
penis:
38.4
MMP3
ENSSSCG00000014985
ENSG00000149968
Interstitial collagenase 18 kDa interstitial collagenase
Tissue enhanced
Detected in many
small intestine:
36.8
upper respiratory system:
34.7
urinary bladder:
43.0
MMP7
ENSSSCG00000014982
ENSG00000137673
Matrix metallopeptidase 7
Tissue enriched
Detected in some
gallbladder:
136.3
MMP8
ENSSSCG00000029675
ENSG00000118113
Matrix metallopeptidase 8
Tissue enriched
Detected in some
dura mater:
26.8
MMP9
ENSSSCG00000007436
ENSG00000100985
Matrix metalloproteinase-9 precursor
Tissue enriched
Detected in many
dura mater:
85.1
MMRN1
ENSSSCG00000009202
ENSG00000138722
Multimerin 1
Tissue enhanced
Detected in many
ovary:
21.2
MMRN2
ENSSSCG00000024048
ENSG00000173269
Multimerin 2
Tissue enhanced
Detected in many
penis:
56.2
MMS22L
ENSSSCG00000004344
ENSG00000146263
MMS22 like, DNA repair protein
Tissue enhanced
Detected in many
lymphoid tissue:
16.1
MN1
ENSSSCG00000009966
ENSG00000169184
MN1 proto-oncogene, transcriptional regulator
Tissue enhanced
Detected in many
cartilage:
60.6
skeletal muscle:
49.1
MND1
ENSSSCG00000009009
ENSG00000121211
Meiotic nuclear divisions 1
Tissue enhanced
Detected in many
lymphoid tissue:
17.8
MNS1
ENSSSCG00000004601
ENSG00000138587
Meiosis specific nuclear structural 1
Tissue enhanced
Detected in many
choroid plexus:
18.3
fallopian tube:
20.6
testis:
20.3
MNX1
ENSSSCG00000016410
ENSG00000130675
Motor neuron and pancreas homeobox 1
Group enriched
Detected in some
brain:
7.3
large intestine:
8.7
small intestine:
12.0
stomach:
9.7
MOCOS
ENSSSCG00000003744
ENSG00000075643
Molybdenum cofactor sulfurase
Tissue enhanced
Detected in all
epididymis:
29.0
MOG
ENSSSCG00000001248
ENSG00000204655
Myelin-oligodendrocyte glycoprotein precursor
Tissue enriched
Detected in some
brain:
170.0
MOGAT1
ENSSSCG00000016225
ENSG00000124003
Monoacylglycerol O-acyltransferase 1
Tissue enhanced
Detected in many
liver:
46.2
small intestine:
16.4
MOK
ENSSSCG00000002531
ENSG00000080823
MOK protein kinase
Tissue enhanced
Detected in many
fallopian tube:
25.5
testis:
36.8
MORC1
ENSSSCG00000011937
ENSG00000114487
MORC family CW-type zinc finger 1
Tissue enriched
Detected in some
liver:
32.2
MORN1
ENSSSCG00000028706
ENSG00000116151
MORN repeat containing 1
Tissue enhanced
Detected in many
testis:
21.0
MORN2
ENSSSCG00000008480
ENSG00000188010
MORN repeat containing 2
Tissue enhanced
Detected in all
choroid plexus:
73.2
testis:
66.9
MORN3
ENSSSCG00000009809
ENSG00000139714
MORN repeat-containing protein 3
Tissue enhanced
Detected in many
fallopian tube:
12.9
testis:
20.8
upper respiratory system:
24.9
MORN4
ENSSSCG00000036954
ENSG00000171160
MORN repeat containing 4
Tissue enhanced
Detected in all
brain:
31.0
MOSPD2
ENSSSCG00000012131
ENSG00000130150
Motile sperm domain-containing protein 2
Tissue enhanced
Detected in all
lens:
33.6
MOV10L1
ENSSSCG00000000976
ENSG00000073146
Mov10 RISC complex RNA helicase like 1
Tissue enriched
Detected in some
testis:
46.7
MOXD1
ENSSSCG00000004191
ENSG00000079931
Monooxygenase DBH like 1
Tissue enhanced
Detected in many
cornea:
73.8
liver:
18.1
skin:
19.6
MPC1L
ENSSSCG00000012248
ENSG00000238205
Mitochondrial pyruvate carrier 1 like
Tissue enriched
Detected in single
testis:
35.4
MPL
ENSSSCG00000030906
ENSG00000117400
MPL proto-oncogene, thrombopoietin receptor
Tissue enhanced
Detected in many
testis:
23.8
MPO
ENSSSCG00000017637
ENSG00000005381
Myeloperoxidase
Tissue enriched
Detected in some
bone marrow:
70.8
MPP1
ENSSSCG00000012822
ENSG00000130830
Membrane palmitoylated protein 1
Tissue enhanced
Detected in all
small intestine:
55.3
MPP2
ENSSSCG00000017367
ENSG00000108852
Membrane palmitoylated protein 2
Tissue enhanced
Detected in all
brain:
35.9
MPP3
ENSSSCG00000017372
ENSG00000161647
Membrane palmitoylated protein 3
Tissue enhanced
Detected in many
brain:
21.8
heart:
7.6
MPP4
ENSSSCG00000026184
ENSG00000082126
Membrane palmitoylated protein 4
Tissue enriched
Detected in some
retina:
134.2
MPP5
ENSSSCG00000002287
ENSG00000072415
Membrane palmitoylated protein 5
Tissue enhanced
Detected in all
thyroid gland:
80.8
MPP6
ENSSSCG00000016717
ENSG00000105926
Membrane palmitoylated protein 6
Tissue enhanced
Detected in many
vagus nerve:
67.5
MPPE1
ENSSSCG00000028126
ENSG00000154889
Metallophosphoesterase 1
Tissue enriched
Detected in many
brain:
51.3
MPPED1
ENSSSCG00000038685
ENSG00000186732
Metallophosphoesterase domain containing 1
Tissue enhanced
Detected in some
brain:
41.2
male glands:
15.0
stomach:
10.4
MPPED2
ENSSSCG00000013327
ENSG00000066382
Metallophosphoesterase domain containing 2
Tissue enhanced
Detected in many
kidney:
28.2
male glands:
33.9
MPZ
ENSSSCG00000006352
ENSG00000158887
Myelin protein zero
Tissue enriched
Detected in some
vagus nerve:
678.4
MPZL2
ENSSSCG00000015091
ENSG00000149573
Myelin protein zero-like protein 2 precursor
Tissue enhanced
Detected in many
cornea:
52.8
dura mater:
44.6
mouth:
39.8
MRAP2
ENSSSCG00000026943
ENSG00000135324
Melanocortin 2 receptor accessory protein 2
Tissue enhanced
Detected in many
cervix:
61.1
endometrium:
22.3
male glands:
25.1
MRAS
ENSSSCG00000027443
ENSG00000158186
Muscle RAS oncogene homolog
Tissue enhanced
Detected in many
brain:
51.1
MRC1
ENSSSCG00000011038
ENSG00000260314
Macrophage mannose receptor 1 precursor
Tissue enhanced
Detected in many
liver:
26.3
synovial tissue:
36.3
MRC2
ENSSSCG00000017300
ENSG00000011028
Mannose receptor C type 2
Tissue enhanced
Detected in many
cartilage:
91.8
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