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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MGAT4D
ENSSSCG00000038236
ENSG00000205301
MGAT4 family member D
Tissue enriched
Detected in some
testis:
37.8
MGAT5
ENSSSCG00000015701
ENSG00000152127
Mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase
Tissue enhanced
Detected in all
male glands:
101.7
MGAT5B
ENSSSCG00000017170
ENSG00000167889
Mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B
Tissue enriched
Detected in some
brain:
29.0
MGLL
ENSSSCG00000024134
ENSG00000074416
Monoglyceride lipase
Tissue enhanced
Detected in many
adipose tissue:
69.3
lens:
80.5
MGP
ENSSSCG00000037697
ENSG00000111341
Matrix Gla protein
Tissue enhanced
Detected in many
aorta:
118.7
dura mater:
144.7
mesothelial tissue:
126.3
MGST1
ENSSSCG00000032580
ENSG00000008394
Microsomal glutathione S-transferase 1
Tissue enhanced
Detected in all
liver:
129.2
thyroid gland:
154.6
MGST2
ENSSSCG00000031736
ENSG00000085871
Microsomal glutathione S-transferase 2
Tissue enhanced
Detected in many
large intestine:
13.3
MIA3
ENSSSCG00000010834
ENSG00000154305
MIA family member 3, ER export factor
Tissue enhanced
Detected in all
male glands:
108.1
MICAL1
ENSSSCG00000004412
ENSG00000135596
Microtubule associated monooxygenase, calponin and LIM domain containing 1
Tissue enhanced
Detected in all
lymphoid tissue:
48.5
MICAL2
ENSSSCG00000013400
ENSG00000133816
Microtubule associated monooxygenase, calponin and LIM domain containing 2
Tissue enhanced
Detected in all
heart:
56.7
MICAL3
ENSSSCG00000000770
ENSG00000243156
Microtubule associated monooxygenase, calponin and LIM domain containing 3
Tissue enhanced
Detected in all
cervix:
80.5
MICALL2
ENSSSCG00000007557
ENSG00000164877
MICAL like 2
Tissue enhanced
Detected in many
stomach:
32.3
MICU3
ENSSSCG00000006981
ENSG00000155970
Mitochondrial calcium uptake family member 3
Tissue enhanced
Detected in all
brain:
41.3
MID1IP1
ENSSSCG00000025447
ENSG00000165175
Mid1-interacting protein 1
Tissue enhanced
Detected in all
brain:
64.1
MID2
ENSSSCG00000012564
ENSG00000080561
Midline 2
Tissue enhanced
Detected in all
lens:
49.2
MIEF2
ENSSSCG00000037151
ENSG00000177427
Mitochondrial elongation factor 2
Tissue enhanced
Detected in all
lens:
33.1
skeletal muscle:
26.3
MIER1
ENSSSCG00000030423
ENSG00000198160
MIER1 transcriptional regulator
Tissue enhanced
Detected in all
lymphoid tissue:
75.9
MIGA2
ENSSSCG00000005669
ENSG00000148343
Mitoguardin 2
Tissue enhanced
Detected in all
heart:
54.4
MINDY3
ENSSSCG00000011045
ENSG00000148481
MINDY lysine 48 deubiquitinase 3
Tissue enhanced
Detected in all
lens:
86.6
MINPP1
ENSSSCG00000010435
ENSG00000107789
Multiple inositol-polyphosphate phosphatase 1
Tissue enriched
Detected in all
lens:
60.4
MIOS
ENSSSCG00000015343
ENSG00000164654
WD repeat-containing protein mio
Tissue enhanced
Detected in all
choroid plexus:
45.3
MIOX
ENSSSCG00000023749
ENSG00000100253
Inositol oxygenase
Group enriched
Detected in many
kidney:
100.7
thyroid gland:
68.8
MIP
ENSSSCG00000000400
ENSG00000135517
Major intrinsic protein of lens fiber
Tissue enriched
Detected in single
lens:
675.3
MIS18A
ENSSSCG00000034229
ENSG00000159055
MIS18 kinetochore protein A
Tissue enhanced
Detected in many
lymphoid tissue:
7.9
testis:
19.2
MISP
ENSSSCG00000013425
ENSG00000099812
Mitotic spindle positioning
Group enriched
Detected in some
large intestine:
83.3
small intestine:
42.0
stomach:
35.5
MISP3
ENSSSCG00000013768
ENSG00000141854
Uncharacterized protein MISP3
Tissue enhanced
Detected in all
male glands:
55.7
MITF
ENSSSCG00000011514
ENSG00000187098
Sus scrofa microphthalmia-associated transcription factor-like (LOC102167244), mRNA.
Tissue enhanced
Detected in all
cervix:
72.5
MIXL1
ENSSSCG00000030675
ENSG00000185155
Mix paired-like homeobox
Tissue enhanced
Detected in many
cervix:
5.5
endometrium:
5.7
MKNK2
ENSSSCG00000013448
ENSG00000099875
MAP kinase interacting serine/threonine kinase 2
Tissue enhanced
Detected in all
lens:
99.7
MKRN1
ENSSSCG00000016498
ENSG00000133606
Makorin ring finger protein 1
Tissue enhanced
Detected in all
testis:
96.3
MKRN2
ENSSSCG00000029877
ENSG00000075975
Makorin ring finger protein 2
Tissue enhanced
Detected in all
lens:
57.2
MKX
ENSSSCG00000029783
ENSG00000150051
Mohawk homeobox
Tissue enhanced
Detected in many
cartilage:
33.3
penis:
37.4
MLANA
ENSSSCG00000005206
ENSG00000120215
Melan-A
Tissue enhanced
Detected in many
choroid plexus:
11.0
MLC1
ENSSSCG00000000978
ENSG00000100427
Megalencephalic leukoencephalopathy with subcortical cysts 1
Tissue enriched
Detected in some
brain:
42.7
MLEC
ENSSSCG00000009914
ENSG00000110917
Malectin
Tissue enhanced
Detected in all
male glands:
75.1
MLF1
ENSSSCG00000037461
ENSG00000178053
Myeloid leukemia factor 1
Tissue enhanced
Detected in many
choroid plexus:
51.9
heart:
51.4
skeletal muscle:
80.9
testis:
86.7
MLIP
ENSSSCG00000001485
ENSG00000146147
Muscular LMNA interacting protein
Group enriched
Detected in some
heart:
106.4
skeletal muscle:
86.5
vagus nerve:
48.5
MLLT11
ENSSSCG00000030278
ENSG00000213190
Protein AF1q
Group enriched
Detected in many
brain:
62.9
pineal gland:
53.3
retina:
20.3
MLN
ENSSSCG00000001521
ENSG00000096395
Promotilin precursor
Group enriched
Detected in some
epididymis:
31.1
small intestine:
39.2
MLPH
ENSSSCG00000032849
ENSG00000115648
Melanophilin
Tissue enhanced
Detected in many
esophagus:
60.9
male glands:
95.7
salivary gland:
81.4
stomach:
67.7
MLXIPL
ENSSSCG00000007710
ENSG00000009950
MLX interacting protein like
Tissue enhanced
Detected in many
adipose tissue:
74.7
liver:
76.6
MMADHC
ENSSSCG00000028646
ENSG00000168288
Methylmalonic aciduria and homocystinuria, cblD type
Tissue enhanced
Detected in all
lens:
37.7
MMD
ENSSSCG00000017605
ENSG00000108960
Monocyte to macrophage differentiation associated
Tissue enhanced
Detected in all
ovary:
43.0
MME
ENSSSCG00000011723
ENSG00000196549
Membrane metalloendopeptidase
Tissue enhanced
Detected in many
choroid plexus:
43.9
endometrium:
40.3
kidney:
60.8
ovary:
39.6
MMEL1
ENSSSCG00000003356
ENSG00000142606
Membrane metalloendopeptidase like 1
Tissue enriched
Detected in some
testis:
31.2
MMP12
ENSSSCG00000014987
ENSG00000262406
Macrophage metalloelastase precursor
Tissue enriched
Detected in some
lymphoid tissue:
35.0
MMP13
ENSSSCG00000014988
ENSG00000137745
Matrix metallopeptidase 13
Group enriched
Detected in some
bone marrow:
49.1
dura mater:
123.1
MMP14
ENSSSCG00000002039
ENSG00000157227
Matrix metallopeptidase 14
Tissue enhanced
Detected in all
cervix:
107.7
ovary:
96.3
MMP15
ENSSSCG00000002806
ENSG00000102996
Matrix metallopeptidase 15
Tissue enhanced
Detected in all
stomach:
61.4
MMP16
ENSSSCG00000006132
ENSG00000156103
Matrix metallopeptidase 16
Tissue enhanced
Detected in many
cartilage:
46.5
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