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Chromosome
1
2
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
MREG
ENSSSCG00000016175
ENSG00000118242
Melanoregulin
Tissue enhanced
Detected in many
brain:
23.1
cornea:
31.2
pineal gland:
20.2
MRGBP
ENSSSCG00000035353
ENSG00000101189
MRG domain binding protein
Tissue enriched
Detected in all
testis:
69.8
MRGPRF
ENSSSCG00000034441
ENSG00000172935
MAS related GPR family member F
Tissue enhanced
Detected in all
cervix:
49.6
smooth muscle:
55.1
MRLN
ENSSSCG00000032953
ENSG00000227877
Myoregulin
Tissue enhanced
Detected in some
adrenal gland:
13.3
skeletal muscle:
8.1
MRO
ENSSSCG00000004521
ENSG00000134042
Protein maestro
Group enriched
Detected in some
ovary:
59.4
testis:
16.0
MROH2A
ENSSSCG00000016305
ENSG00000185038
Maestro heat like repeat family member 2A
Tissue enriched
Detected in single
testis:
24.0
MROH2B
ENSSSCG00000021645
ENSG00000171495
Maestro heat like repeat family member 2B
Tissue enriched
Detected in single
testis:
64.1
MROH6
ENSSSCG00000006948
ENSG00000204839
Maestro heat like repeat family member 6
Tissue enhanced
Detected in many
mouth:
12.4
skin:
9.2
urinary bladder:
13.5
MROH9
ENSSSCG00000026160
ENSG00000117501
Maestro heat like repeat family member 9
Tissue enriched
Detected in single
testis:
11.3
MRPL37
ENSSSCG00000032083
ENSG00000116221
Mitochondrial ribosomal protein L37
Tissue enhanced
Detected in all
lens:
78.4
MRPL51
ENSSSCG00000039662
ENSG00000111639
Mitochondrial ribosomal protein L51
Tissue enhanced
Detected in all
testis:
57.8
MRPL57
ENSSSCG00000031280
ENSG00000173141
Mitochondrial ribosomal protein L57
Tissue enhanced
Detected in all
male glands:
85.8
MRPS6
ENSSSCG00000026981
ENSG00000243927
Mitochondrial ribosomal protein S6
Tissue enhanced
Detected in all
lens:
62.4
male glands:
50.3
MRVI1
ENSSSCG00000020720
ENSG00000072952
Murine retrovirus integration site 1 homolog
Tissue enhanced
Detected in many
smooth muscle:
58.2
MS4A1
ENSSSCG00000021812
ENSG00000156738
B-lymphocyte antigen CD20
Tissue enhanced
Detected in some
lung:
28.1
lymphoid tissue:
79.8
small intestine:
31.3
upper respiratory system:
52.6
MS4A12
ENSSSCG00000027387
ENSG00000071203
Membrane spanning 4-domains A12
Group enriched
Detected in some
large intestine:
71.9
small intestine:
24.1
MS4A15
ENSSSCG00000034847
ENSG00000166961
Membrane spanning 4-domains A15
Tissue enriched
Detected in single
brain:
30.0
MS4A2
ENSSSCG00000034506
ENSG00000149534
High affinity immunoglobulin epsilon receptor subunit beta
Tissue enhanced
Detected in many
adipose tissue:
28.2
MS4A5
ENSSSCG00000026796
ENSG00000166930
Membrane spanning 4-domains A5
Tissue enriched
Detected in some
testis:
67.4
MSANTD3-TMEFF1
ENSSSCG00000005391
ENSG00000251349
MSANTD3-TMEFF1 readthrough
Tissue enhanced
Detected in many
brain:
44.5
MSC
ENSSSCG00000006187
ENSG00000178860
Musculin
Tissue enhanced
Detected in many
lymphoid tissue:
35.8
MSGN1
ENSSSCG00000026538
ENSG00000151379
Mesogenin 1
Tissue enriched
Detected in some
cartilage:
10.3
MSI1
ENSSSCG00000029365
ENSG00000135097
RNA-binding protein Musashi homolog 1
Tissue enhanced
Detected in all
lens:
43.9
retina:
48.9
MSLNL
ENSSSCG00000023487
ENSG00000162006
Mesothelin-like
Tissue enhanced
Detected in some
pituitary gland:
5.1
testis:
3.9
MSMB
ENSSSCG00000010400
ENSG00000263639
Beta-microseminoprotein precursor
Tissue enriched
Detected in some
male glands:
2458.8
MSMO1
ENSSSCG00000008857
ENSG00000052802
Methylsterol monooxygenase 1
Tissue enhanced
Detected in all
brain:
67.2
liver:
52.2
ovary:
61.3
MSMP
ENSSSCG00000038905
ENSG00000215183
Microseminoprotein, prostate associated
Tissue enriched
Detected in some
cartilage:
372.9
MSRA
ENSSSCG00000009684
ENSG00000175806
Methionine sulfoxide reductase A
Tissue enhanced
Detected in all
brain:
47.4
kidney:
39.7
liver:
46.1
MSRB3
ENSSSCG00000026004
ENSG00000174099
Methionine sulfoxide reductase B3
Tissue enhanced
Detected in many
smooth muscle:
70.8
MSS51
ENSSSCG00000010300
ENSG00000166343
MSS51 mitochondrial translational activator
Tissue enriched
Detected in all
skeletal muscle:
61.1
MST1
ENSSSCG00000011386
ENSG00000173531
Macrophage stimulating 1
Group enriched
Detected in many
epididymis:
18.3
liver:
52.4
thyroid gland:
23.7
MST1R
ENSSSCG00000027992
ENSG00000164078
Macrophage stimulating 1 receptor
Tissue enhanced
Detected in many
skin:
31.4
stomach:
32.8
MSTN
ENSSSCG00000016047
ENSG00000138379
Growth/differentiation factor 8
Group enriched
Detected in some
breast:
7.0
choroid plexus:
20.9
retina:
17.5
skeletal muscle:
9.1
MSX1
ENSSSCG00000008727
ENSG00000163132
Homeobox protein MSX-1
Tissue enhanced
Detected in many
choroid plexus:
36.0
endometrium:
42.5
penis:
30.6
MSX2
ENSSSCG00000034500
ENSG00000120149
Msh homeobox 2
Tissue enhanced
Detected in many
choroid plexus:
21.7
endometrium:
22.5
skin:
33.8
MT1A
ENSSSCG00000023684
Metallothionein-1A
Tissue enriched
Detected in all
liver:
134.9
MT3
ENSSSCG00000024305
ENSG00000087250
Metallothionein-3
Tissue enhanced
Detected in many
brain:
123.6
pineal gland:
25.4
pituitary gland:
40.4
MT4
ENSSSCG00000031359
ENSG00000102891
Metallothionein 4
Tissue enriched
Detected in some
skin:
92.6
MTBP
ENSSSCG00000005995
ENSG00000172167
MDM2 binding protein
Tissue enhanced
Detected in many
lymphoid tissue:
14.9
MTCH1
ENSSSCG00000001571
ENSG00000137409
Mitochondrial carrier homolog 1 isoform 1
Tissue enhanced
Detected in all
male glands:
141.8
MTF2
ENSSSCG00000006898
ENSG00000143033
Metal response element binding transcription factor 2
Tissue enriched
Detected in all
lymphoid tissue:
77.4
MTFR1
ENSSSCG00000006219
ENSG00000066855
Mitochondrial fission regulator 1
Tissue enhanced
Detected in all
testis:
48.2
MTHFD1
ENSSSCG00000002269
ENSG00000100714
Methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1
Tissue enhanced
Detected in all
liver:
47.6
MTHFD1L
ENSSSCG00000004092
ENSG00000120254
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like
Tissue enhanced
Detected in many
epididymis:
39.7
lens:
35.0
MTHFD2
ENSSSCG00000008289
ENSG00000065911
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase
Tissue enhanced
Detected in all
male glands:
39.3
ovary:
29.7
MTHFR
ENSSSCG00000003428
ENSG00000177000
Methylenetetrahydrofolate reductase
Tissue enriched
Detected in all
epididymis:
94.0
MTMR11
ENSSSCG00000006664
ENSG00000014914
Myotubularin-related protein 11
Tissue enhanced
Detected in many
large intestine:
38.3
MTMR3
ENSSSCG00000009994
ENSG00000100330
Myotubularin related protein 3
Tissue enhanced
Detected in all
lens:
67.9
MTNR1A
ENSSSCG00000007002
ENSG00000168412
Melatonin receptor 1A
Tissue enriched
Detected in some
mesothelial tissue:
17.7
MTNR1B
ENSSSCG00000014939
ENSG00000134640
Melatonin receptor 1B
Group enriched
Detected in some
bone marrow:
2.1
brain:
4.6
cartilage:
2.0
endometrium:
1.9
mouth:
5.1
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