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Gene name
Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
FAM162B
ENSSSCG00000038522
ENSG00000183807
Family with sequence similarity 162 member B
Tissue enhanced
Detected in many
pituitary gland:
29.7
salivary gland:
30.9
FAM163A
ENSSSCG00000033352
ENSG00000143340
Family with sequence similarity 163 member A
Tissue enhanced
Detected in all
adrenal gland:
38.7
FAM163B
ENSSSCG00000026442
ENSG00000196990
Family with sequence similarity 163 member B
Group enriched
Detected in some
brain:
37.5
retina:
10.7
FAM166A
ENSSSCG00000005848
ENSG00000188163
Family with sequence similarity 166 member A
Tissue enriched
Detected in single
testis:
62.8
FAM166B
ENSSSCG00000005309
ENSG00000215187
Protein FAM166B
Group enriched
Detected in many
fallopian tube:
46.2
upper respiratory system:
48.2
FAM167A
ENSSSCG00000032852
ENSG00000154319
Family with sequence similarity 167 member A
Tissue enhanced
Detected in many
brain:
21.4
dura mater:
13.9
FAM168A
ENSSSCG00000039996
ENSG00000054965
Family with sequence similarity 168 member A
Tissue enhanced
Detected in all
brain:
41.2
FAM169A
ENSSSCG00000014076
ENSG00000198780
Family with sequence similarity 169 member A
Tissue enhanced
Detected in many
cornea:
32.5
lens:
32.1
pineal gland:
28.7
pituitary gland:
27.6
retina:
49.7
FAM170A
ENSSSCG00000014228
ENSG00000164334
Family with sequence similarity 170 member A
Group enriched
Detected in some
testis:
13.5
thyroid gland:
23.2
FAM170B
ENSSSCG00000010387
ENSG00000172538
Family with sequence similarity 170 member B
Tissue enriched
Detected in single
testis:
35.4
FAM171A2
ENSSSCG00000017356
ENSG00000161682
Family with sequence similarity 171 member A2
Tissue enhanced
Detected in many
kidney:
29.7
male glands:
22.8
FAM171B
ENSSSCG00000025134
ENSG00000144369
Family with sequence similarity 171 member B
Tissue enhanced
Detected in many
brain:
49.7
pineal gland:
50.1
FAM174B
ENSSSCG00000002265
ENSG00000185442
Family with sequence similarity 174 member B
Tissue enhanced
Detected in many
male glands:
122.3
FAM177B
ENSSSCG00000010837
ENSG00000197520
Family with sequence similarity 177 member B
Tissue enhanced
Detected in many
esophagus:
29.1
male glands:
76.7
FAM178B
ENSSSCG00000008196
ENSG00000168754
Family with sequence similarity 178 member B
Tissue enhanced
Detected in many
testis:
20.6
vagus nerve:
11.5
FAM180A
ENSSSCG00000036403
ENSG00000189320
Family with sequence similarity 180 member A
Tissue enhanced
Detected in many
cartilage:
24.4
dura mater:
28.3
FAM180B
ENSSSCG00000013230
ENSG00000196666
Family with sequence similarity 180 member B
Tissue enhanced
Detected in some
aorta:
7.2
dura mater:
24.6
vagus nerve:
15.5
FAM181A
ENSSSCG00000040253
ENSG00000140067
Family with sequence similarity 181 member A
Group enriched
Detected in some
brain:
19.1
testis:
54.1
FAM181B
ENSSSCG00000014897
ENSG00000182103
Family with sequence similarity 181 member B
Tissue enriched
Detected in many
brain:
31.5
FAM184A
ENSSSCG00000004245
ENSG00000111879
Family with sequence similarity 184 member A
Tissue enhanced
Detected in many
brain:
25.4
choroid plexus:
25.7
testis:
17.6
FAM184B
ENSSSCG00000026232
ENSG00000047662
Family with sequence similarity 184 member B
Tissue enhanced
Detected in many
epididymis:
37.2
esophagus:
17.9
FAM186B
ENSSSCG00000000205
ENSG00000135436
Family with sequence similarity 186 member B
Group enriched
Detected in all
epididymis:
9.8
testis:
35.7
FAM187B
ENSSSCG00000027989
ENSG00000177558
Family with sequence similarity 187 member B
Tissue enriched
Detected in single
testis:
54.1
FAM189A2
ENSSSCG00000005249
ENSG00000135063
Family with sequence similarity 189 member A2
Tissue enriched
Detected in many
thyroid gland:
101.3
FAM196B
ENSSSCG00000017010
ENSG00000204767
Family with sequence similarity 196 member B
Tissue enhanced
Detected in many
lymphoid tissue:
22.6
FAM198A
ENSSSCG00000011294
ENSG00000144649
Family with sequence similarity 198 member A
Tissue enhanced
Detected in many
dura mater:
40.3
FAM19A2
ENSSSCG00000034686
ENSG00000198673
Family with sequence similarity 19 member A2, C-C motif chemokine like
Tissue enriched
Detected in some
brain:
30.5
FAM19A4
ENSSSCG00000033199
ENSG00000163377
Family with sequence similarity 19 member A4, C-C motif chemokine like
Tissue enhanced
Detected in some
brain:
18.7
retina:
7.4
FAM19A5
ENSSSCG00000034776
ENSG00000219438
Family with sequence similarity 19 member A5, C-C motif chemokine like
Tissue enhanced
Detected in many
brain:
21.9
epididymis:
13.5
vagus nerve:
10.6
FAM209B
ENSSSCG00000007498
ENSG00000124103,ENSG00000213714
Protein FAM209B precursor
Tissue enriched
Detected in some
testis:
83.5
FAM20A
ENSSSCG00000017258
ENSG00000108950
FAM20A, golgi associated secretory pathway pseudokinase
Tissue enhanced
Detected in many
cartilage:
63.8
liver:
25.9
FAM20C
ENSSSCG00000020813
ENSG00000177706
FAM20C, golgi associated secretory pathway kinase
Tissue enhanced
Detected in all
cartilage:
47.3
FAM213B
ENSSSCG00000026554
ENSG00000157870
Prostamide/prostaglandin F synthase
Tissue enhanced
Detected in many
brain:
21.2
lens:
53.5
FAM216B
ENSSSCG00000009428
ENSG00000179813
Protein FAM216B
Tissue enhanced
Detected in all
fallopian tube:
53.2
FAM219A
ENSSSCG00000035455
ENSG00000164970
Family with sequence similarity 219 member A
Tissue enhanced
Detected in all
brain:
31.0
FAM221B
ENSSSCG00000005324
ENSG00000204930
Family with sequence similarity 221 member B
Tissue enriched
Detected in many
testis:
43.6
FAM222A
ENSSSCG00000009927
ENSG00000139438
Family with sequence similarity 222 member A
Tissue enhanced
Detected in many
adrenal gland:
39.2
lens:
42.6
retina:
24.7
FAM227B
ENSSSCG00000004648
ENSG00000166262
Family with sequence similarity 227 member B
Tissue enriched
Detected in many
testis:
38.7
FAM229B
ENSSSCG00000036621
ENSG00000203778
Family with sequence similarity 229 member B
Tissue enhanced
Detected in all
testis:
33.3
FAM234B
ENSSSCG00000000619
ENSG00000084444
Protein FAM234B
Tissue enhanced
Detected in all
brain:
31.8
male glands:
31.5
FAM240A
ENSSSCG00000032551
ENSG00000283473
Family with sequence similarity 240 member A
Tissue enhanced
Detected in many
fallopian tube:
17.7
FAM241B
ENSSSCG00000040498
ENSG00000171224
Family with sequence similarity 241 member B
Tissue enhanced
Detected in some
brain:
7.5
liver:
11.7
FAM3B
ENSSSCG00000012075
ENSG00000183844
Family with sequence similarity 3 member B
Tissue enhanced
Detected in many
gallbladder:
30.3
large intestine:
31.3
stomach:
102.7
FAM3C
ENSSSCG00000016616
ENSG00000196937
Family with sequence similarity 3 member C
Tissue enhanced
Detected in all
male glands:
75.3
FAM3D
ENSSSCG00000025529
ENSG00000198643
Family with sequence similarity 3 member D
Tissue enhanced
Detected in some
epididymis:
46.8
large intestine:
56.0
small intestine:
29.8
stomach:
39.6
FAM43B
ENSSSCG00000030706
ENSG00000183114
Family with sequence similarity 43 member B
Tissue enhanced
Detected in many
kidney:
23.9
male glands:
20.7
stomach:
22.1
FAM46B
ENSSSCG00000036755
ENSG00000158246
Family with sequence similarity 46 member B
Tissue enhanced
Detected in many
smooth muscle:
36.4
FAM46C
ENSSSCG00000006729
ENSG00000183508
Protein FAM46C
Tissue enhanced
Detected in all
lens:
86.2
male glands:
78.3
testis:
66.6
FAM46D
ENSSSCG00000012450
ENSG00000174016
Family with sequence similarity 46 member D
Tissue enriched
Detected in single
testis:
32.6
FAM49A
ENSSSCG00000008617
ENSG00000197872
Family with sequence similarity 49 member A
Tissue enhanced
Detected in all
lymphoid tissue:
42.3
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