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Human disease related genes
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CDRT4
ENSSSCG00000039792
ENSG00000239704
CMT1A duplicated region transcript 4
Tissue enhanced
Detected in many
epididymis:
18.5
testis:
33.6
CDSN
ENSSSCG00000030903
ENSG00000204539
Corneodesmosin
Tissue enriched
Detected in some
skin:
49.1
CDT1
ENSSSCG00000002651
ENSG00000167513
Chromatin licensing and DNA replication factor 1
Tissue enhanced
Detected in many
lymphoid tissue:
20.1
CDV3
ENSSSCG00000027294
ENSG00000091527
CDV3 homolog
Tissue enhanced
Detected in all
lens:
125.4
CDX1
ENSSSCG00000014445
ENSG00000113722
Caudal type homeobox 1
Group enriched
Detected in some
large intestine:
68.4
small intestine:
22.1
CDX2
ENSSSCG00000009317
ENSG00000165556
Homeobox protein CDX-2
Group enriched
Detected in some
large intestine:
91.0
small intestine:
38.5
CDYL2
ENSSSCG00000038128
ENSG00000166446
Chromodomain Y like 2
Tissue enhanced
Detected in all
adrenal gland:
33.5
CEACAM16
ENSSSCG00000003081
ENSG00000213892
Carcinoembryonic antigen related cell adhesion molecule 16
Tissue enhanced
Detected in many
kidney:
16.8
CEACAM19
ENSSSCG00000003078
ENSG00000186567
Carcinoembryonic antigen related cell adhesion molecule 19
Tissue enhanced
Detected in many
breast:
9.3
mouth:
10.8
salivary gland:
10.8
CEACAM20
ENSSSCG00000028218
ENSG00000273777
Carcinoembryonic antigen related cell adhesion molecule 20
Tissue enhanced
Detected in many
male glands:
22.7
thyroid gland:
12.9
CEBPA
ENSSSCG00000002866
ENSG00000245848
CCAAT/enhancer binding protein alpha
Tissue enhanced
Detected in many
adipose tissue:
149.5
bone marrow:
77.5
CEBPD
ENSSSCG00000032367
ENSG00000221869
CCAAT/enhancer binding protein delta
Tissue enhanced
Detected in many
mesothelial tissue:
76.8
CEBPE
ENSSSCG00000002033
ENSG00000092067
CCAAT/enhancer binding protein epsilon
Tissue enhanced
Detected in some
adipose tissue:
4.7
bone marrow:
21.7
dura mater:
7.9
CEL
ENSSSCG00000028671
ENSG00000170835
Carboxyl ester lipase
Tissue enhanced
Detected in many
male glands:
9.0
CELA2A
ENSSSCG00000003459
ENSG00000142615,ENSG00000215704
Chymotrypsin-like elastase family member 2A
Tissue enriched
Detected in some
testis:
29.8
CELF1
ENSSSCG00000013233
ENSG00000149187
CUGBP Elav-like family member 1
Tissue enriched
Detected in all
lens:
174.0
CELF3
ENSSSCG00000006618
ENSG00000159409
CUGBP Elav-like family member 3
Group enriched
Detected in some
adrenal gland:
11.1
brain:
37.0
pineal gland:
29.5
pituitary gland:
30.6
retina:
32.8
CELF4
ENSSSCG00000003748
ENSG00000101489
CUGBP Elav-like family member 4
Tissue enhanced
Detected in many
brain:
31.3
pineal gland:
18.6
retina:
12.7
CELF5
ENSSSCG00000013476
ENSG00000161082
CUGBP Elav-like family member 5
Tissue enhanced
Detected in some
brain:
27.0
fallopian tube:
9.1
CELSR2
ENSSSCG00000034360
ENSG00000143126
Cadherin EGF LAG seven-pass G-type receptor 2
Tissue enhanced
Detected in many
brain:
32.1
CELSR3
ENSSSCG00000011360
ENSG00000008300
Cadherin EGF LAG seven-pass G-type receptor 3
Tissue enhanced
Detected in some
brain:
16.7
pituitary gland:
9.2
retina:
9.7
testis:
16.2
CEMIP
ENSSSCG00000038929
ENSG00000103888
Cell migration inducing hyaluronan binding protein
Tissue enhanced
Detected in many
brain:
29.7
ovary:
44.6
CEND1
ENSSSCG00000012845
ENSG00000184524
Cell cycle exit and neuronal differentiation protein 1
Tissue enhanced
Detected in some
brain:
53.1
pineal gland:
20.0
retina:
11.6
CENPA
ENSSSCG00000038543
ENSG00000115163
Centromere protein A
Tissue enhanced
Detected in many
lymphoid tissue:
23.7
CENPE
ENSSSCG00000023296
ENSG00000138778
Centromere protein E
Tissue enhanced
Detected in many
large intestine:
15.5
lymphoid tissue:
29.2
CENPF
ENSSSCG00000015581
ENSG00000117724
Centromere protein F
Tissue enhanced
Detected in many
large intestine:
19.1
lymphoid tissue:
41.0
testis:
22.4
CENPL
ENSSSCG00000015496
ENSG00000120334
Centromere protein L
Tissue enhanced
Detected in many
lymphoid tissue:
11.4
testis:
8.4
CENPM
ENSSSCG00000035991
ENSG00000100162
Centromere protein M
Tissue enhanced
Detected in all
lens:
53.2
CENPN
ENSSSCG00000039216
ENSG00000166451
Centromere protein N
Tissue enhanced
Detected in many
choroid plexus:
13.5
CENPO
ENSSSCG00000008579
ENSG00000138092
Centromere protein O
Tissue enhanced
Detected in many
lymphoid tissue:
14.8
CENPT
ENSSSCG00000002768
ENSG00000102901
Centromere protein T
Tissue enhanced
Detected in all
lymphoid tissue:
27.1
testis:
22.3
CENPU
ENSSSCG00000015785
ENSG00000151725
Centromere protein U
Tissue enhanced
Detected in many
testis:
27.3
CEP126
ENSSSCG00000014979
ENSG00000110318
Centrosomal protein 126
Tissue enhanced
Detected in many
fallopian tube:
48.2
testis:
40.2
CEP131
ENSSSCG00000017143
ENSG00000141577
Centrosomal protein 131
Tissue enhanced
Detected in all
cartilage:
35.2
CEP152
ENSSSCG00000004657
ENSG00000103995
Centrosomal protein 152
Tissue enhanced
Detected in many
vagus nerve:
40.6
CEP164
ENSSSCG00000015080
ENSG00000110274
Centrosomal protein 164
Tissue enriched
Detected in all
testis:
56.2
CEP170B
ENSSSCG00000002558
ENSG00000099814
Centrosomal protein 170B
Tissue enhanced
Detected in many
epididymis:
69.4
CEP44
ENSSSCG00000032475
ENSG00000164118
Centrosomal protein 44
Tissue enhanced
Detected in all
testis:
27.8
CEP55
ENSSSCG00000010477
ENSG00000138180
Centrosomal protein 55
Tissue enhanced
Detected in many
testis:
34.9
CEP57L1
ENSSSCG00000004391
ENSG00000183137
Centrosomal protein 57 like 1
Tissue enhanced
Detected in all
testis:
20.6
CEP63
ENSSSCG00000011645
ENSG00000182923
Centrosomal protein 63
Tissue enhanced
Detected in all
testis:
80.9
CEP72
ENSSSCG00000031800
ENSG00000112877
Centrosomal protein 72
Tissue enhanced
Detected in some
epididymis:
8.9
lens:
12.3
stomach:
13.2
testis:
28.0
CEP85
ENSSSCG00000026731
ENSG00000130695
Centrosomal protein 85
Tissue enhanced
Detected in all
heart:
36.1
skeletal muscle:
50.6
testis:
59.8
CEPT1
ENSSSCG00000029918
ENSG00000134255
Choline/ethanolamine phosphotransferase 1
Tissue enhanced
Detected in all
male glands:
43.3
CER1
ENSSSCG00000039169
ENSG00000147869
Cerberus 1, DAN family BMP antagonist
Tissue enhanced
Detected in some
choroid plexus:
7.6
kidney:
18.6
CERCAM
ENSSSCG00000005650
ENSG00000167123
Cerebral endothelial cell adhesion molecule
Tissue enhanced
Detected in many
cartilage:
38.6
synovial tissue:
37.8
CERKL
ENSSSCG00000016010
ENSG00000188452
Ceramide kinase like
Tissue enhanced
Detected in some
fallopian tube:
15.5
pineal gland:
42.1
retina:
36.9
CERS2
ENSSSCG00000006644
ENSG00000143418
Ceramide synthase 2
Tissue enhanced
Detected in all
brain:
92.5
CERS3
ENSSSCG00000004819
ENSG00000154227
Ceramide synthase 3
Group enriched
Detected in some
mouth:
19.9
skin:
13.2
testis:
35.6
CERS4
ENSSSCG00000013595
ENSG00000090661
Ceramide synthase 4
Tissue enriched
Detected in many
epididymis:
111.9
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