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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
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Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CERS6
ENSSSCG00000032715
ENSG00000172292
Ceramide synthase 6
Tissue enhanced
Detected in many
lens:
30.5
CES3
ENSSSCG00000024476
ENSG00000172828
Carboxylesterase 3 precursor
Tissue enhanced
Detected in many
epididymis:
32.4
liver:
96.5
CETN1
ENSSSCG00000028613
ENSG00000177143
Centrin 1
Tissue enriched
Detected in single
testis:
165.2
CFAP126
ENSSSCG00000023957
ENSG00000188931
Cilia and flagella associated protein 126
Tissue enhanced
Detected in all
choroid plexus:
63.1
fallopian tube:
75.7
testis:
53.2
upper respiratory system:
71.6
CFAP157
ENSSSCG00000005618
ENSG00000160401
Cilia and flagella associated protein 157
Tissue enhanced
Detected in all
lung:
24.6
upper respiratory system:
25.9
CFAP161
ENSSSCG00000001786
ENSG00000156206
Cilia- and flagella-associated protein 161
Tissue enhanced
Detected in some
brain:
11.3
choroid plexus:
17.1
fallopian tube:
26.6
lung:
11.6
upper respiratory system:
19.7
CFAP20
ENSSSCG00000002805
ENSG00000070761
Cilia- and flagella-associated protein 20
Tissue enriched
Detected in all
lens:
56.2
CFAP221
ENSSSCG00000015741
ENSG00000163075
Cilia and flagella associated protein 221
Tissue enhanced
Detected in all
fallopian tube:
23.3
testis:
27.9
CFAP46
ENSSSCG00000010768
ENSG00000171811
Cilia and flagella associated protein 46
Tissue enhanced
Detected in many
fallopian tube:
37.6
lung:
31.0
testis:
19.4
CFAP52
ENSSSCG00000017994
ENSG00000166596
Cilia and flagella associated protein 52
Tissue enhanced
Detected in some
brain:
14.0
fallopian tube:
30.1
testis:
30.3
upper respiratory system:
21.2
CFAP54
ENSSSCG00000033574
ENSG00000188596
Cilia and flagella associated protein 54
Tissue enhanced
Detected in many
choroid plexus:
31.6
fallopian tube:
62.8
upper respiratory system:
24.1
CFAP57
ENSSSCG00000023904
ENSG00000243710
Cilia and flagella associated protein 57
Tissue enhanced
Detected in some
fallopian tube:
21.1
lymphoid tissue:
21.4
testis:
15.6
upper respiratory system:
14.8
CFAP58
ENSSSCG00000010614
ENSG00000120051
Cilia and flagella associated protein 58
Tissue enhanced
Detected in many
choroid plexus:
23.8
fallopian tube:
22.9
testis:
19.2
CFAP61
ENSSSCG00000038858
ENSG00000089101
Cilia and flagella associated protein 61
Tissue enhanced
Detected in some
choroid plexus:
16.5
fallopian tube:
25.0
testis:
41.2
upper respiratory system:
18.9
CFAP65
ENSSSCG00000016203
ENSG00000181378
Cilia and flagella associated protein 65
Group enriched
Detected in some
fallopian tube:
37.0
lung:
20.9
testis:
24.4
upper respiratory system:
27.7
CFAP69
ENSSSCG00000015303
ENSG00000105792
Cilia and flagella associated protein 69
Tissue enhanced
Detected in many
choroid plexus:
19.0
fallopian tube:
34.0
testis:
23.8
CFAP70
ENSSSCG00000010298
ENSG00000156042
Cilia and flagella associated protein 70
Tissue enhanced
Detected in many
fallopian tube:
28.7
testis:
53.2
CFAP73
ENSSSCG00000009875
ENSG00000186710
Cilia and flagella associated protein 73
Tissue enhanced
Detected in some
choroid plexus:
10.2
fallopian tube:
27.9
lung:
12.1
upper respiratory system:
22.7
CFAP74
ENSSSCG00000030513
ENSG00000142609
Cilia and flagella associated protein 74
Tissue enhanced
Detected in many
kidney:
23.9
lung:
25.6
CFAP77
ENSSSCG00000005727
ENSG00000188523
Cilia and flagella associated protein 77
Tissue enhanced
Detected in all
fallopian tube:
26.7
upper respiratory system:
19.9
CFAP97
ENSSSCG00000015791
ENSG00000164323
Cilia and flagella associated protein 97
Tissue enriched
Detected in all
testis:
129.9
CFAP97D1
ENSSSCG00000017373
ENSG00000231256
CFAP97 domain containing 1
Tissue enriched
Detected in some
testis:
143.7
CFD
ENSSSCG00000013418
ENSG00000197766
Complement factor D
Tissue enhanced
Detected in many
gallbladder:
125.8
small intestine:
98.3
stomach:
122.6
CFL2
ENSSSCG00000001959
ENSG00000165410
Cofilin-2
Tissue enhanced
Detected in all
skeletal muscle:
60.3
smooth muscle:
74.5
CFP
ENSSSCG00000012278
ENSG00000126759
Complement factor properdin
Tissue enhanced
Detected in many
lymphoid tissue:
22.0
small intestine:
36.0
stomach:
48.2
CFTR
ENSSSCG00000016626
ENSG00000001626
Cystic fibrosis transmembrane conductance regulator
Tissue enhanced
Detected in many
large intestine:
16.2
small intestine:
43.3
CGA
ENSSSCG00000025434
ENSG00000135346
Glycoprotein hormones alpha chain
Tissue enriched
Detected in some
pituitary gland:
401.1
CGAS
ENSSSCG00000021383
ENSG00000164430
Cyclic GMP-AMP synthase
Tissue enhanced
Detected in all
lymphoid tissue:
24.0
CGN
ENSSSCG00000006621
ENSG00000143375
Cingulin
Tissue enhanced
Detected in many
stomach:
50.2
CGNL1
ENSSSCG00000035038
ENSG00000128849
Cingulin like 1
Tissue enhanced
Detected in many
kidney:
62.8
thyroid gland:
72.5
CGREF1
ENSSSCG00000008555
ENSG00000138028
Cell growth regulator with EF-hand domain 1
Tissue enhanced
Detected in many
esophagus:
36.8
male glands:
137.1
salivary gland:
40.7
CH25H
ENSSSCG00000010449
ENSG00000138135
Cholesterol 25-hydroxylase
Tissue enhanced
Detected in many
epididymis:
43.9
ovary:
26.5
CHAC1
ENSSSCG00000038521
ENSG00000128965
ChaC glutathione specific gamma-glutamylcyclotransferase 1
Tissue enhanced
Detected in all
skin:
29.2
CHAD
ENSSSCG00000017569
ENSG00000136457
Chondroadherin
Tissue enriched
Detected in many
cartilage:
273.3
CHADL
ENSSSCG00000000067
ENSG00000100399
Chondroadherin like
Tissue enriched
Detected in some
cartilage:
80.3
CHAF1A
ENSSSCG00000013509
ENSG00000167670
Chromatin assembly factor 1 subunit A
Tissue enhanced
Detected in all
testis:
28.8
CHAF1B
ENSSSCG00000012056
ENSG00000159259
Chromatin assembly factor 1 subunit B
Tissue enhanced
Detected in many
lymphoid tissue:
15.3
CHAT
ENSSSCG00000010392
ENSG00000070748
Choline O-acetyltransferase
Tissue enhanced
Detected in all
brain:
14.4
cornea:
23.6
CHCHD10
ENSSSCG00000010073
ENSG00000250479
Coiled-coil-helix-coiled-coil-helix domain containing 10
Tissue enhanced
Detected in all
heart:
175.7
skeletal muscle:
132.4
CHCHD5
ENSSSCG00000008094
ENSG00000125611
Coiled-coil-helix-coiled-coil-helix domain containing 5
Tissue enhanced
Detected in all
lens:
70.4
testis:
52.8
CHD5
ENSSSCG00000003366
ENSG00000116254
Chromodomain helicase DNA binding protein 5
Tissue enhanced
Detected in many
brain:
26.9
testis:
27.0
CHDH
ENSSSCG00000011456
ENSG00000016391
Choline dehydrogenase
Tissue enhanced
Detected in many
liver:
44.2
CHGA
ENSSSCG00000002456
ENSG00000100604
Chromogranin-A precursor
Tissue enriched
Detected in some
adrenal gland:
301.0
CHGB
ENSSSCG00000039779
ENSG00000089199
Secretogranin-1 precursor
Group enriched
Detected in some
adrenal gland:
150.2
pituitary gland:
276.8
CHI3L1
ENSSSCG00000015476
ENSG00000133048
Chitinase-3-like protein 1 precursor
Group enriched
Detected in some
cartilage:
58.5
lung:
39.6
synovial tissue:
21.1
upper respiratory system:
18.7
CHIA
ENSSSCG00000023706
ENSG00000134216
Acidic mammalian chitinase precursor
Tissue enriched
Detected in many
breast:
82.1
CHIC2
ENSSSCG00000032645
ENSG00000109220
Cysteine rich hydrophobic domain 2
Tissue enhanced
Detected in all
lymphoid tissue:
39.5
CHIT1
ENSSSCG00000015477
ENSG00000133063
Chitinase 1
Tissue enhanced
Detected in some
dura mater:
2.8
testis:
7.1
CHKA
ENSSSCG00000012889
ENSG00000110721
Choline kinase alpha
Tissue enhanced
Detected in all
male glands:
41.6
CHL1
ENSSSCG00000011524
ENSG00000134121
Cell adhesion molecule L1 like
Tissue enhanced
Detected in many
brain:
47.4
pineal gland:
36.4
vagus nerve:
36.8
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