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Chromosome
1
2
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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13372 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
CDC45
ENSSSCG00000010122
ENSG00000093009
Cell division cycle 45
Tissue enhanced
Detected in many
cartilage:
31.2
CDC6
ENSSSCG00000017471
ENSG00000094804
Cell division cycle 6
Tissue enhanced
Detected in all
lymphoid tissue:
19.7
CDCA2
ENSSSCG00000009653
ENSG00000184661
Cell division cycle associated 2
Group enriched
Detected in many
lymphoid tissue:
14.7
testis:
44.3
CDCA7
ENSSSCG00000015961
ENSG00000144354
Cell division cycle associated 7
Tissue enhanced
Detected in all
lymphoid tissue:
34.3
CDCA7L
ENSSSCG00000015380
ENSG00000164649
Cell division cycle associated 7 like
Tissue enhanced
Detected in many
lymphoid tissue:
46.9
CDCA8
ENSSSCG00000032909
ENSG00000134690
Cell division cycle associated 8
Tissue enhanced
Detected in many
lymphoid tissue:
20.0
testis:
11.2
upper respiratory system:
12.6
CDH1
ENSSSCG00000025652
ENSG00000039068
Cadherin-1 precursor
Tissue enhanced
Detected in many
male glands:
78.6
CDH10
ENSSSCG00000016802
ENSG00000040731
Cadherin 10
Tissue enhanced
Detected in some
brain:
21.6
pituitary gland:
5.0
retina:
6.3
CDH11
ENSSSCG00000002795
ENSG00000140937
Cadherin-11 preproprotein
Tissue enhanced
Detected in many
dura mater:
51.5
CDH12
ENSSSCG00000016799
ENSG00000154162
Cadherin 12
Tissue enhanced
Detected in some
brain:
18.4
retina:
9.4
smooth muscle:
9.5
CDH13
ENSSSCG00000002684
ENSG00000140945
Cadherin-13 precursor
Tissue enhanced
Detected in many
cartilage:
105.0
heart:
54.6
synovial tissue:
58.9
CDH15
ENSSSCG00000002642
ENSG00000129910
Cadherin 15
Tissue enhanced
Detected in many
brain:
17.2
skeletal muscle:
19.1
CDH16
ENSSSCG00000022721
ENSG00000166589
Cadherin 16
Tissue enriched
Detected in some
kidney:
124.9
CDH17
ENSSSCG00000006106
ENSG00000079112
Cadherin 17
Group enriched
Detected in all
large intestine:
70.1
small intestine:
27.3
stomach:
18.6
CDH18
ENSSSCG00000026842
ENSG00000145526
Cadherin 18
Group enriched
Detected in some
brain:
25.7
pineal gland:
55.4
CDH19
ENSSSCG00000004885
ENSG00000071991
Cadherin 19
Tissue enhanced
Detected in many
ductus deferens:
10.5
vagus nerve:
35.0
CDH2
ENSSSCG00000003722
ENSG00000170558
Cadherin 2
Tissue enhanced
Detected in many
heart:
61.5
lens:
70.7
pituitary gland:
36.5
CDH20
ENSSSCG00000004903
ENSG00000101542
Cadherin 20
Tissue enriched
Detected in some
brain:
22.9
CDH22
ENSSSCG00000007439
ENSG00000149654
Cadherin 22
Tissue enriched
Detected in some
brain:
17.8
CDH24
ENSSSCG00000002037
ENSG00000139880
Cadherin 24
Tissue enriched
Detected in many
lymphoid tissue:
60.4
CDH3
ENSSSCG00000023162
ENSG00000062038
Cadherin 3
Tissue enhanced
Detected in many
choroid plexus:
29.6
kidney:
32.5
thyroid gland:
48.9
CDH4
ENSSSCG00000025784
ENSG00000179242
Cadherin 4
Tissue enhanced
Detected in many
brain:
20.8
kidney:
9.4
pituitary gland:
9.5
CDH7
ENSSSCG00000004886
ENSG00000081138
Cadherin 7
Group enriched
Detected in some
brain:
37.0
retina:
24.3
CDH8
ENSSSCG00000040687
ENSG00000150394
Cadherin 8
Tissue enhanced
Detected in some
brain:
27.5
epididymis:
29.0
pineal gland:
20.2
CDH9
ENSSSCG00000020845
ENSG00000113100
Cadherin 9
Tissue enhanced
Detected in some
brain:
18.1
epididymis:
5.9
CDHR1
ENSSSCG00000010348
ENSG00000148600
Cadherin related family member 1
Group enriched
Detected in many
brain:
22.3
pineal gland:
24.1
retina:
71.5
CDHR2
ENSSSCG00000014055
ENSG00000074276
Cadherin related family member 2
Group enriched
Detected in some
gallbladder:
17.6
kidney:
22.3
large intestine:
38.2
small intestine:
46.9
CDHR4
ENSSSCG00000011391
ENSG00000187492
Cadherin related family member 4
Group enriched
Detected in many
fallopian tube:
41.1
lung:
14.6
upper respiratory system:
25.4
CDHR5
ENSSSCG00000012852
ENSG00000099834
Cadherin related family member 5
Group enriched
Detected in some
kidney:
61.8
large intestine:
55.5
small intestine:
93.7
CDK14
ENSSSCG00000015307
ENSG00000058091
Cyclin dependent kinase 14
Tissue enhanced
Detected in all
brain:
50.0
CDK15
ENSSSCG00000022296
ENSG00000138395
Cyclin dependent kinase 15
Tissue enhanced
Detected in many
lens:
15.2
CDK17
ENSSSCG00000028182
ENSG00000059758
Cyclin dependent kinase 17
Tissue enhanced
Detected in all
brain:
62.5
CDK18
ENSSSCG00000015290
ENSG00000117266
Cyclin dependent kinase 18
Tissue enhanced
Detected in all
heart:
55.0
CDK2
ENSSSCG00000000373
ENSG00000123374
Cyclin-dependent kinase 2
Tissue enhanced
Detected in many
lymphoid tissue:
27.2
CDK3
ENSSSCG00000017193
ENSG00000250506
Cyclin dependent kinase 3
Tissue enhanced
Detected in many
liver:
19.1
CDK5R1
ENSSSCG00000017730
ENSG00000176749
Cyclin dependent kinase 5 regulatory subunit 1
Group enriched
Detected in many
brain:
59.5
lens:
37.3
CDK5R2
ENSSSCG00000021584
ENSG00000171450
Cyclin dependent kinase 5 regulatory subunit 2
Tissue enriched
Detected in some
brain:
49.8
CDK6
ENSSSCG00000040183
ENSG00000105810
Cyclin dependent kinase 6
Tissue enhanced
Detected in all
lymphoid tissue:
52.9
CDKL1
ENSSSCG00000034516
ENSG00000100490
Cyclin dependent kinase like 1
Tissue enhanced
Detected in all
kidney:
48.2
CDKL2
ENSSSCG00000008970
ENSG00000138769
Cyclin dependent kinase like 2
Tissue enhanced
Detected in many
testis:
32.4
thyroid gland:
19.5
CDKL3
ENSSSCG00000014302
ENSG00000006837
Cyclin dependent kinase like 3
Tissue enriched
Detected in many
testis:
42.6
CDKL5
ENSSSCG00000012156
ENSG00000008086
Cyclin dependent kinase like 5
Tissue enhanced
Detected in all
brain:
34.8
CDKN1A
ENSSSCG00000001565
ENSG00000124762
Cyclin dependent kinase inhibitor 1A
Tissue enhanced
Detected in many
choroid plexus:
88.1
CDKN2B
ENSSSCG00000034120
ENSG00000147883
Cyclin-dependent kinase 4 inhibitor B
Tissue enhanced
Detected in all
mouth:
21.6
small intestine:
20.9
CDKN2D
ENSSSCG00000013643
ENSG00000129355
Cyclin dependent kinase inhibitor 2D
Tissue enhanced
Detected in many
testis:
48.1
CDKN3
ENSSSCG00000005047
ENSG00000100526
Cyclin-dependent kinase inhibitor 3
Tissue enhanced
Detected in all
testis:
63.9
CDO1
ENSSSCG00000014219
ENSG00000129596
Cysteine dioxygenase type 1
Group enriched
Detected in many
lens:
88.3
liver:
54.7
male glands:
203.4
CDON
ENSSSCG00000022504
ENSG00000064309
Cell adhesion associated, oncogene regulated
Tissue enhanced
Detected in many
cartilage:
107.4
mesothelial tissue:
70.4
CDPF1
ENSSSCG00000000005
ENSG00000205643
Cysteine rich DPF motif domain containing 1
Tissue enriched
Detected in all
lens:
67.8
CDR1
ENSSSCG00000036655
ENSG00000184258
Cerebellar degeneration related protein 1
Group enriched
Detected in many
brain:
791.0
choroid plexus:
541.4
pineal gland:
560.1
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