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UMAP gene cluster
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Keyword
Chromosome
1
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
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Stomach 1
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Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
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TISSUE SPECIFIC PROTEOME
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
WEE2
ENSSSCG00000016489
ENSG00000214102
Wee1-like protein kinase 2
Tissue enhanced
Detected in many
testis:
16.4
WFDC1
ENSSSCG00000023837
ENSG00000103175
WAP four-disulfide core domain protein 1 precursor
Tissue enhanced
Detected in many
penis:
74.2
smooth muscle:
55.4
WFDC10A
ENSSSCG00000029121
ENSG00000180305
WAP four-disulfide core domain 10A
Group enriched
Detected in some
ductus deferens:
130.1
epididymis:
430.8
WFDC9
ENSSSCG00000007408
ENSG00000180205
WAP four-disulfide core domain 9
Tissue enriched
Detected in some
epididymis:
132.7
WFIKKN1
ENSSSCG00000037013
ENSG00000127578
WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1
Tissue enhanced
Detected in many
ovary:
13.4
WFS1
ENSSSCG00000032452
ENSG00000109501
Wolframin ER transmembrane glycoprotein
Tissue enriched
Detected in all
brain:
93.7
WHAMM
ENSSSCG00000001805
ENSG00000156232
WAS protein homolog associated with actin, golgi membranes and microtubules
Low tissue specificity
Detected in all
WHRN
ENSSSCG00000005490
ENSG00000095397
Whirlin
Tissue enhanced
Detected in all
lymphoid tissue:
29.4
WIPF1
ENSSSCG00000027348
ENSG00000115935
WAS/WASL interacting protein family member 1
Low tissue specificity
Detected in all
WIPF2
ENSSSCG00000017479
ENSG00000171475
WAS/WASL-interacting protein family member 2
Low tissue specificity
Detected in all
WIPI1
ENSSSCG00000017260
ENSG00000070540
WD repeat domain phosphoinositide-interacting protein 1
Tissue enhanced
Detected in all
male glands:
52.0
WIPI2
ENSSSCG00000007580
ENSG00000157954
WD repeat domain phosphoinositide-interacting protein 2
Low tissue specificity
Detected in all
WISP1
ENSSSCG00000005946
ENSG00000104415
WNT1 inducible signaling pathway protein 1
Tissue enhanced
Detected in many
cartilage:
33.9
WISP2
ENSSSCG00000031648
ENSG00000064205
WNT1 inducible signaling pathway protein 2
Low tissue specificity
Detected in all
WISP3
ENSSSCG00000004422
ENSG00000112761
WNT1 inducible signaling pathway protein 3
Group enriched
Detected in all
cartilage:
57.5
male glands:
22.0
WLS
ENSSSCG00000003795
ENSG00000116729
Wntless Wnt ligand secretion mediator
Tissue enhanced
Detected in many
choroid plexus:
66.6
lens:
73.9
pineal gland:
103.5
WNK2
ENSSSCG00000034154
ENSG00000165238
WNK lysine deficient protein kinase 2
Tissue enhanced
Detected in many
male glands:
78.4
WNK4
ENSSSCG00000017387
ENSG00000126562
WNK lysine deficient protein kinase 4
Tissue enhanced
Detected in many
cartilage:
36.2
kidney:
46.7
penis:
29.3
vagus nerve:
36.8
WNT10B
ENSSSCG00000000182
ENSG00000169884
Protein Wnt-10b precursor
Low tissue specificity
Detected in all
WNT11
ENSSSCG00000022347
ENSG00000085741
Wnt family member 11
Tissue enhanced
Detected in all
cartilage:
30.9
WNT2
ENSSSCG00000016628
ENSG00000105989
Wnt family member 2
Tissue enhanced
Detected in many
cervix:
34.9
cornea:
18.2
endometrium:
13.8
WNT2B
ENSSSCG00000006780
ENSG00000134245
Wnt family member 2B
Low tissue specificity
Detected in all
WNT5A
ENSSSCG00000035859
ENSG00000114251
Wnt family member 5A
Tissue enhanced
Detected in many
cornea:
43.9
urinary bladder:
38.3
WNT9A
ENSSSCG00000024671
ENSG00000143816
Wnt family member 9A
Low tissue specificity
Detected in many
WNT9B
ENSSSCG00000035524
ENSG00000158955
Wnt family member 9B
Low tissue specificity
Detected in all
WRAP73
ENSSSCG00000003360
ENSG00000116213
WD repeat-containing protein WRAP73
Low tissue specificity
Detected in all
WRN
ENSSSCG00000015840
ENSG00000165392
Werner syndrome RecQ like helicase
Low tissue specificity
Detected in all
WSB1
ENSSSCG00000017752
ENSG00000109046
WD repeat and SOCS box containing 1
Low tissue specificity
Detected in all
WSB2
ENSSSCG00000009853
ENSG00000176871
WD repeat and SOCS box containing 2
Tissue enhanced
Detected in all
brain:
95.4
lens:
82.2
WSCD1
ENSSSCG00000017894
ENSG00000179314
WSC domain containing 1
Tissue enhanced
Detected in many
brain:
41.5
pineal gland:
18.9
WSCD2
ENSSSCG00000039261
ENSG00000075035
WSC domain containing 2
Tissue enhanced
Detected in many
brain:
30.4
cartilage:
24.1
choroid plexus:
46.3
WTAP
ENSSSCG00000004050
ENSG00000146457
Pre-mRNA-splicing regulator WTAP isoform 1
Low tissue specificity
Detected in all
WTIP
ENSSSCG00000039166
ENSG00000142279
WT1 interacting protein
Low tissue specificity
Detected in all
WWC2
ENSSSCG00000021731
ENSG00000151718
WW and C2 domain containing 2
Low tissue specificity
Detected in all
WWC3
ENSSSCG00000012108
ENSG00000047644
WWC family member 3
Low tissue specificity
Detected in all
WWOX
ENSSSCG00000027415
ENSG00000186153
WW domain containing oxidoreductase
Low tissue specificity
Detected in all
WWP1
ENSSSCG00000006137
ENSG00000123124
WW domain containing E3 ubiquitin protein ligase 1
Tissue enhanced
Detected in all
skeletal muscle:
59.8
WWP2
ENSSSCG00000022609
ENSG00000198373
WW domain containing E3 ubiquitin protein ligase 2
Tissue enriched
Detected in all
cartilage:
172.4
WWTR1
ENSSSCG00000011704
ENSG00000018408
WW domain containing transcription regulator 1
Low tissue specificity
Detected in all
XAB2
ENSSSCG00000013582
ENSG00000076924
XPA binding protein 2
Low tissue specificity
Detected in all
XBP1
ENSSSCG00000030996
ENSG00000100219
X-box-binding protein 1 isoform XBP1(S)
Tissue enhanced
Detected in all
male glands:
252.4
XCR1
ENSSSCG00000026707
ENSG00000173578
Chemokine XC receptor 1
Tissue enhanced
Detected in many
lymphoid tissue:
25.4
XG
ENSSSCG00000036036
ENSG00000124343
Xg blood group
Low tissue specificity
Detected in all
XIRP2
ENSSSCG00000015917
ENSG00000163092
Xin actin binding repeat containing 2
Tissue enriched
Detected in some
skeletal muscle:
162.8
XK
ENSSSCG00000031868
ENSG00000047597
X-linked Kx blood group
Low tissue specificity
Detected in many
XKR5
ENSSSCG00000015756
ENSG00000275591
XK related 5
Low tissue specificity
Detected in all
XKR6
ENSSSCG00000009693
ENSG00000171044
XK related 6
Tissue enhanced
Detected in all
brain:
25.1
XKR8
ENSSSCG00000030623
ENSG00000158156
XK related 8
Low tissue specificity
Detected in all
XPA
ENSSSCG00000005368
ENSG00000136936
XPA, DNA damage recognition and repair factor
Low tissue specificity
Detected in all
XPC
ENSSSCG00000011602
ENSG00000154767
XPC complex subunit, DNA damage recognition and repair factor
Low tissue specificity
Detected in all
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