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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Gene name
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Other congenital disorders
Other diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
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5
6
7
8
9
10
11
12
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14
15
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
XPNPEP1
ENSSSCG00000010620
ENSG00000108039
X-prolyl aminopeptidase 1
Low tissue specificity
Detected in all
XPNPEP2
ENSSSCG00000012651
ENSG00000122121
Xaa-Pro aminopeptidase 2
Group enriched
Detected in many
kidney:
67.5
small intestine:
54.0
XPO1
ENSSSCG00000028228
ENSG00000082898
Exportin 1
Low tissue specificity
Detected in all
XPO4
ENSSSCG00000009276
ENSG00000132953
Exportin 4
Low tissue specificity
Detected in all
XPO5
ENSSSCG00000001679
ENSG00000124571
Exportin 5
Low tissue specificity
Detected in all
XPO6
ENSSSCG00000007812
ENSG00000169180
Exportin 6
Low tissue specificity
Detected in all
XPO7
ENSSSCG00000009611
ENSG00000130227
Exportin 7
Low tissue specificity
Detected in all
XPOT
ENSSSCG00000000466
ENSG00000184575
Exportin for tRNA
Low tissue specificity
Detected in all
XPR1
ENSSSCG00000015537
ENSG00000143324
Xenotropic and polytropic retrovirus receptor 1
Low tissue specificity
Detected in all
XRCC1
ENSSSCG00000003055
ENSG00000073050
X-ray repair cross complementing 1
Low tissue specificity
Detected in all
XRCC2
ENSSSCG00000032315
ENSG00000196584
X-ray repair cross complementing 2
Low tissue specificity
Detected in all
XRCC3
ENSSSCG00000002546
ENSG00000126215
X-ray repair cross complementing 3
Low tissue specificity
Detected in all
XRCC5
ENSSSCG00000016177
ENSG00000079246
X-ray repair cross complementing 5
Low tissue specificity
Detected in all
XRCC6
ENSSSCG00000000059
ENSG00000196419
X-ray repair cross-complementing protein 6
Low tissue specificity
Detected in all
XRN2
ENSSSCG00000007109
ENSG00000088930
5'-3' exoribonuclease 2
Low tissue specificity
Detected in all
XRRA1
ENSSSCG00000021702
ENSG00000166435
X-ray radiation resistance associated 1
Low tissue specificity
Detected in all
XXYLT1
ENSSSCG00000035414
ENSG00000173950
Xyloside xylosyltransferase 1
Low tissue specificity
Detected in all
XYLB
ENSSSCG00000011254
ENSG00000093217
Xylulokinase
Group enriched
Detected in all
choroid plexus:
15.1
kidney:
32.6
liver:
55.7
thyroid gland:
14.3
XYLT1
ENSSSCG00000007872
ENSG00000103489
Xylosyltransferase 1
Tissue enriched
Detected in many
cartilage:
92.2
XYLT2
ENSSSCG00000017573
ENSG00000015532
Xylosyltransferase 2
Low tissue specificity
Detected in all
YAE1D1
ENSSSCG00000030497
ENSG00000241127
Yae1 domain containing 1
Low tissue specificity
Detected in all
YAF2
ENSSSCG00000031775
ENSG00000015153
YY1 associated factor 2
Low tissue specificity
Detected in all
YAP1
ENSSSCG00000031429
ENSG00000137693
Yes associated protein 1
Low tissue specificity
Detected in all
YARS
ENSSSCG00000030369
ENSG00000134684
Tyrosyl-tRNA synthetase
Low tissue specificity
Detected in all
YARS2
ENSSSCG00000027429
ENSG00000139131
Tyrosyl-tRNA synthetase 2
Low tissue specificity
Detected in all
YBEY
ENSSSCG00000033116
ENSG00000182362
YbeY metallopeptidase (putative)
Low tissue specificity
Detected in all
YBX1
ENSSSCG00000028485
ENSG00000065978
Y-box binding protein 1
Tissue enhanced
Detected in all
lens:
296.5
YBX3
ENSSSCG00000000633
ENSG00000060138
Y-box binding protein 3
Tissue enhanced
Detected in all
skeletal muscle:
405.5
YEATS2
ENSSSCG00000011776
ENSG00000163872
YEATS domain containing 2
Low tissue specificity
Detected in all
YEATS4
ENSSSCG00000037845
ENSG00000127337
YEATS domain containing 4
Low tissue specificity
Detected in all
YES1
ENSSSCG00000031942
ENSG00000176105
YES proto-oncogene 1, Src family tyrosine kinase
Low tissue specificity
Detected in all
YIF1A
ENSSSCG00000012953
ENSG00000174851
Yip1 interacting factor homolog A, membrane trafficking protein
Low tissue specificity
Detected in all
YIF1B
ENSSSCG00000002952
ENSG00000167645
Protein YIF1B
Low tissue specificity
Detected in all
YIPF1
ENSSSCG00000028506
ENSG00000058799
Yip1 domain family member 1
Low tissue specificity
Detected in all
YIPF2
ENSSSCG00000013634
ENSG00000130733
Yip1 domain family member 2
Tissue enhanced
Detected in all
male glands:
78.4
YIPF3
ENSSSCG00000033627
ENSG00000137207
Protein YIPF3
Low tissue specificity
Detected in all
YIPF4
ENSSSCG00000035747
ENSG00000119820
Yip1 domain family member 4
Low tissue specificity
Detected in all
YIPF5
ENSSSCG00000039309
ENSG00000145817
Protein YIPF5
Low tissue specificity
Detected in all
YIPF6
ENSSSCG00000028336
ENSG00000181704
Yip1 domain family member 6
Low tissue specificity
Detected in all
YIPF7
ENSSSCG00000008806
ENSG00000177752
Yip1 domain family member 7
Group enriched
Detected in some
heart:
32.5
skeletal muscle:
34.9
YKT6
ENSSSCG00000016750
ENSG00000106636
Synaptobrevin homolog YKT6
Low tissue specificity
Detected in all
YLPM1
ENSSSCG00000002372
ENSG00000119596
YLP motif containing 1
Low tissue specificity
Detected in all
YME1L1
ENSSSCG00000011066
ENSG00000136758
YME1 like 1 ATPase
Low tissue specificity
Detected in all
YOD1
ENSSSCG00000015659
ENSG00000180667
YOD1 deubiquitinase
Tissue enhanced
Detected in all
testis:
57.6
YPEL2
ENSSSCG00000035400
ENSG00000175155
Yippee like 2
Tissue enhanced
Detected in all
lens:
54.0
YPEL3
ENSSSCG00000035430
ENSG00000090238
Yippee like 3
Low tissue specificity
Detected in all
YPEL4
ENSSSCG00000037892
ENSG00000166793
Yippee like 4
Tissue enhanced
Detected in many
brain:
22.0
YPEL5
ENSSSCG00000008529
ENSG00000119801
Yippee like 5
Low tissue specificity
Detected in all
YRDC
ENSSSCG00000040425
ENSG00000196449
YrdC N6-threonylcarbamoyltransferase domain containing
Low tissue specificity
Detected in all
YTHDC1
ENSSSCG00000035505
ENSG00000083896
YTH domain containing 1
Low tissue specificity
Detected in all
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