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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
11
12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
VPS72
ENSSSCG00000031869
ENSG00000163159
Vacuolar protein sorting 72 homolog
Low tissue specificity
Detected in all
VPS8
ENSSSCG00000011788
ENSG00000156931
VPS8, CORVET complex subunit
Low tissue specificity
Detected in all
VPS9D1
ENSSSCG00000022310
ENSG00000075399
VPS9 domain containing 1
Low tissue specificity
Detected in all
VRK1
ENSSSCG00000002506
ENSG00000100749
Serine/threonine-protein kinase VRK1
Tissue enhanced
Detected in all
lymphoid tissue:
34.5
VRK2
ENSSSCG00000008395
ENSG00000028116
Vaccinia related kinase 2
Low tissue specificity
Detected in all
VRK3
ENSSSCG00000003204
ENSG00000105053
Vaccinia related kinase 3
Low tissue specificity
Detected in all
VSIG10
ENSSSCG00000009852
ENSG00000176834
V-set and immunoglobulin domain containing 10
Low tissue specificity
Detected in all
VSIG2
ENSSSCG00000015199
ENSG00000019102
V-set and immunoglobulin domain containing 2
Tissue enhanced
Detected in many
stomach:
83.1
vagus nerve:
27.1
VSIG4
ENSSSCG00000035170
ENSG00000155659
V-set and immunoglobulin domain-containing protein 4 precursor
Tissue enhanced
Detected in many
adipose tissue:
25.2
synovial tissue:
65.3
VSIR
ENSSSCG00000010280
ENSG00000107738
V-set immunoregulatory receptor
Low tissue specificity
Detected in many
VSTM2B
ENSSSCG00000023921
ENSG00000187135
V-set and transmembrane domain containing 2B
Low tissue specificity
Detected in all
VSTM4
ENSSSCG00000010385
ENSG00000165633
V-set and transmembrane domain containing 4
Tissue enhanced
Detected in all
choroid plexus:
44.0
VTA1
ENSSSCG00000004140
ENSG00000009844
Vesicle trafficking 1
Low tissue specificity
Detected in all
VTCN1
ENSSSCG00000006731
ENSG00000134258
V-set domain containing T cell activation inhibitor 1
Low tissue specificity
Detected in many
VTI1A
ENSSSCG00000032968
ENSG00000151532
Vesicle transport through interaction with t-SNAREs 1A
Low tissue specificity
Detected in all
VTI1B
ENSSSCG00000002295
ENSG00000100568
Vesicle transport through interaction with t-SNAREs homolog 1B
Low tissue specificity
Detected in all
VWA1
ENSSSCG00000003344
ENSG00000179403
Von Willebrand factor A domain containing 1
Tissue enhanced
Detected in many
vagus nerve:
105.0
VWA2
ENSSSCG00000010649
ENSG00000165816
Von Willebrand factor A domain containing 2
Tissue enhanced
Detected in many
epididymis:
26.1
VWA5A
ENSSSCG00000015175
ENSG00000110002
Von Willebrand factor A domain containing 5A
Low tissue specificity
Detected in all
VWA7
ENSSSCG00000036796
ENSG00000204396
Von Willebrand factor A domain-containing protein 7 precursor
Tissue enhanced
Detected in many
thyroid gland:
23.3
VWA8
ENSSSCG00000029837
ENSG00000102763
Von Willebrand factor A domain containing 8
Low tissue specificity
Detected in all
VWCE
ENSSSCG00000013093
ENSG00000167992
Von Willebrand factor C and EGF domains
Group enriched
Detected in all
cartilage:
51.0
liver:
41.2
VWDE
ENSSSCG00000022543
ENSG00000146530
Von Willebrand factor D and EGF domains
Tissue enhanced
Detected in some
brain:
6.9
kidney:
12.9
penis:
7.7
pituitary gland:
6.4
smooth muscle:
5.7
VWF
ENSSSCG00000000712
ENSG00000110799
Von Willebrand factor precursor
Low tissue specificity
Detected in all
WAC
ENSSSCG00000011013
ENSG00000095787
WW domain containing adaptor with coiled-coil
Low tissue specificity
Detected in all
WAPL
ENSSSCG00000010357
ENSG00000062650
WAPL cohesin release factor
Low tissue specificity
Detected in all
WARS
ENSSSCG00000002516
ENSG00000140105
Tryptophanyl-tRNA synthetase
Tissue enhanced
Detected in all
stomach:
76.5
WARS2
ENSSSCG00000027153
ENSG00000116874
Tryptophan--tRNA ligase, mitochondrial
Low tissue specificity
Detected in all
WAS
ENSSSCG00000036747
ENSG00000015285
Wiskott-Aldrich syndrome
Tissue enhanced
Detected in all
lymphoid tissue:
69.6
stomach:
41.4
WASF2
ENSSSCG00000003577
ENSG00000158195
Wiskott-Aldrich syndrome protein family member 2
Low tissue specificity
Detected in all
WASF3
ENSSSCG00000009300
ENSG00000132970
WAS protein family member 3
Low tissue specificity
Detected in all
WASHC1
ENSSSCG00000000746
ENSG00000181404
WASH complex subunit 1
Low tissue specificity
Detected in all
WASHC4
ENSSSCG00000000840
ENSG00000136051
WASH complex subunit 4
Low tissue specificity
Detected in all
WASHC5
ENSSSCG00000005969
ENSG00000164961
WASH complex subunit 5
Low tissue specificity
Detected in all
WASL
ENSSSCG00000016604
ENSG00000106299
Wiskott-Aldrich syndrome like
Low tissue specificity
Detected in all
WBP1
ENSSSCG00000035061
ENSG00000239779
WW domain binding protein 1
Low tissue specificity
Detected in all
WBP11
ENSSSCG00000000611
ENSG00000084463
WW domain binding protein 11
Tissue enhanced
Detected in all
testis:
97.8
WBP1L
ENSSSCG00000029594
ENSG00000166272
WW domain binding protein 1 like
Low tissue specificity
Detected in all
WBP2
ENSSSCG00000021672
ENSG00000132471
WW domain binding protein 2
Low tissue specificity
Detected in all
WBP4
ENSSSCG00000031627
ENSG00000120688
WW domain binding protein 4
Low tissue specificity
Detected in all
WDCP
ENSSSCG00000008589
ENSG00000163026
WD repeat and coiled coil containing
Low tissue specificity
Detected in all
WDFY1
ENSSSCG00000025174
ENSG00000085449
WD repeat and FYVE domain-containing protein 1
Low tissue specificity
Detected in all
WDFY3
ENSSSCG00000009230
ENSG00000163625
WD repeat and FYVE domain containing 3
Low tissue specificity
Detected in all
WDHD1
ENSSSCG00000005052
ENSG00000198554
WD repeat and HMG-box DNA binding protein 1
Low tissue specificity
Detected in all
WDPCP
ENSSSCG00000032229
ENSG00000143951
WD repeat containing planar cell polarity effector
Tissue enhanced
Detected in all
choroid plexus:
27.7
WDR1
ENSSSCG00000036501
ENSG00000071127
WD repeat domain 1
Low tissue specificity
Detected in all
WDR11
ENSSSCG00000010692
ENSG00000120008
WD repeat domain 11
Low tissue specificity
Detected in all
WDR12
ENSSSCG00000016116
ENSG00000138442
WD repeat domain 12
Low tissue specificity
Detected in all
WDR13
ENSSSCG00000023759
ENSG00000101940
WD repeat domain 13
Low tissue specificity
Detected in all
WDR17
ENSSSCG00000015766
ENSG00000150627
WD repeat domain 17
Tissue enhanced
Detected in many
male glands:
21.0
retina:
52.1
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