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UMAP gene cluster
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
VDR
ENSSSCG00000020864
ENSG00000111424
Vitamin D3 receptor
Tissue enhanced
Detected in many
large intestine:
34.3
skin:
35.4
small intestine:
43.2
VEGFA
ENSSSCG00000001695
ENSG00000112715
Vascular endothelial growth factor A precursor
Tissue enhanced
Detected in all
thyroid gland:
94.9
VEGFB
ENSSSCG00000013037
ENSG00000173511
Vascular endothelial growth factor B
Low tissue specificity
Detected in all
VEGFC
ENSSSCG00000015770
ENSG00000150630
Vascular endothelial growth factor C
Tissue enhanced
Detected in many
thyroid gland:
33.4
VEGFD
ENSSSCG00000012135
ENSG00000165197
Vascular endothelial growth factor D
Low tissue specificity
Detected in many
VEZF1
ENSSSCG00000017623
ENSG00000136451
Vascular endothelial zinc finger 1
Low tissue specificity
Detected in all
VEZT
ENSSSCG00000000900
ENSG00000028203
Vezatin, adherens junctions transmembrane protein
Low tissue specificity
Detected in all
VGLL1
ENSSSCG00000025438
ENSG00000102243
Vestigial like family member 1
Low tissue specificity
Detected in all
VGLL2
ENSSSCG00000004255
ENSG00000170162
Vestigial like family member 2
Tissue enriched
Detected in some
skeletal muscle:
94.8
VGLL3
ENSSSCG00000032398
ENSG00000206538
Transcription cofactor vestigial-like protein 3
Tissue enhanced
Detected in many
mesothelial tissue:
30.9
vagus nerve:
39.6
VGLL4
ENSSSCG00000030581
ENSG00000144560
Vestigial like family member 4
Low tissue specificity
Detected in all
VIM
ENSSSCG00000011033
ENSG00000026025
Vimentin
Tissue enhanced
Detected in all
lens:
729.5
VIPAS39
ENSSSCG00000002403
ENSG00000151445
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
Low tissue specificity
Detected in all
VIPR1
ENSSSCG00000011280
ENSG00000114812
Vasoactive intestinal polypeptide receptor 1 precursor
Tissue enhanced
Detected in all
male glands:
92.6
VIPR2
ENSSSCG00000016403
ENSG00000106018
Vasoactive intestinal polypeptide receptor 2 precursor
Tissue enhanced
Detected in many
mesothelial tissue:
50.2
VIRMA
ENSSSCG00000006100
ENSG00000164944
Vir like m6A methyltransferase associated
Low tissue specificity
Detected in all
VIT
ENSSSCG00000008501
ENSG00000205221
Vitrin
Group enriched
Detected in many
cartilage:
112.4
lens:
52.1
VKORC1
ENSSSCG00000035364
ENSG00000167397
Vitamin K epoxide reductase complex subunit 1
Low tissue specificity
Detected in all
VLDLR
ENSSSCG00000005229
ENSG00000147852
Very low-density lipoprotein receptor precursor
Tissue enhanced
Detected in all
ovary:
56.7
VMO1
ENSSSCG00000017915
ENSG00000182853
Vitelline membrane outer layer protein 1 homolog precursor
Group enriched
Detected in many
salivary gland:
21.5
upper respiratory system:
61.2
VMP1
ENSSSCG00000017668
ENSG00000062716
Vacuole membrane protein 1
Tissue enhanced
Detected in all
ovary:
100.7
VNN2
ENSSSCG00000004179
ENSG00000112303
Vanin 2
Tissue enhanced
Detected in some
endometrium:
55.5
fallopian tube:
20.1
upper respiratory system:
67.5
VOPP1
ENSSSCG00000032734
ENSG00000154978
VOPP1, WBP1/VOPP1 family member
Tissue enhanced
Detected in many
retina:
73.7
VPS11
ENSSSCG00000015107
ENSG00000160695
VPS11, CORVET/HOPS core subunit
Low tissue specificity
Detected in all
VPS13B
ENSSSCG00000006071
ENSG00000132549
Vacuolar protein sorting 13 homolog B
Low tissue specificity
Detected in all
VPS13C
ENSSSCG00000036431
ENSG00000129003
Vacuolar protein sorting 13 homolog C
Low tissue specificity
Detected in all
VPS13D
ENSSSCG00000003438
ENSG00000048707
Vacuolar protein sorting 13 homolog D
Low tissue specificity
Detected in all
VPS16
ENSSSCG00000007167
ENSG00000215305
VPS16, CORVET/HOPS core subunit
Low tissue specificity
Detected in all
VPS18
ENSSSCG00000004757
ENSG00000104142
VPS18, CORVET/HOPS core subunit
Low tissue specificity
Detected in all
VPS25
ENSSSCG00000034782
ENSG00000131475
Vacuolar protein sorting 25 homolog
Low tissue specificity
Detected in all
VPS26A
ENSSSCG00000010250
ENSG00000122958
VPS26, retromer complex component A
Low tissue specificity
Detected in all
VPS26B
ENSSSCG00000028123
Vacuolar protein sorting-associated protein 26B
Tissue enriched
Detected in all
epididymis:
263.1
VPS26C
ENSSSCG00000012063
ENSG00000157538
VPS26 endosomal protein sorting factor C
Low tissue specificity
Detected in all
VPS28
ENSSSCG00000005904
ENSG00000160948
VPS28, ESCRT-I subunit
Low tissue specificity
Detected in all
VPS29
ENSSSCG00000009823
ENSG00000111237
VPS29, retromer complex component
Low tissue specificity
Detected in all
VPS35
ENSSSCG00000026239
ENSG00000069329
VPS35, retromer complex component
Low tissue specificity
Detected in all
VPS35L
ENSSSCG00000027324
ENSG00000103544
VPS35 endosomal protein sorting factor like
Low tissue specificity
Detected in all
VPS37A
ENSSSCG00000006984
ENSG00000155975
VPS37A, ESCRT-I subunit
Low tissue specificity
Detected in all
VPS37B
ENSSSCG00000028889
ENSG00000139722
Vacuolar protein sorting-associated protein 37B
Low tissue specificity
Detected in all
VPS37C
ENSSSCG00000028762
ENSG00000167987
VPS37C, ESCRT-I subunit
Low tissue specificity
Detected in all
VPS37D
ENSSSCG00000033358
ENSG00000176428
VPS37D, ESCRT-I subunit
Low tissue specificity
Detected in all
VPS39
ENSSSCG00000004731
ENSG00000166887
VPS39, HOPS complex subunit
Low tissue specificity
Detected in all
VPS41
ENSSSCG00000016772
ENSG00000006715
VPS41, HOPS complex subunit
Low tissue specificity
Detected in all
VPS45
ENSSSCG00000006661
ENSG00000136631
Vacuolar protein sorting-associated protein 45
Low tissue specificity
Detected in all
VPS4B
ENSSSCG00000004893
ENSG00000119541
Vacuolar protein sorting 4 homolog B
Low tissue specificity
Detected in all
VPS50
ENSSSCG00000022982
ENSG00000004766
VPS50, EARP/GARPII complex subunit
Tissue enhanced
Detected in all
brain:
47.6
VPS51
ENSSSCG00000013005
ENSG00000149823
VPS51, GARP complex subunit
Low tissue specificity
Detected in all
VPS52
ENSSSCG00000001501
ENSG00000223501
VPS52, GARP complex subunit
Low tissue specificity
Detected in all
VPS53
ENSSSCG00000017812
ENSG00000141252
VPS53, GARP complex subunit
Low tissue specificity
Detected in all
VPS54
ENSSSCG00000027509
ENSG00000143952
VPS54, GARP complex subunit
Low tissue specificity
Detected in all
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