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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLC4A2
ENSSSCG00000021475
ENSG00000164889
Solute carrier family 4 member 2
Tissue enriched
Detected in all
choroid plexus:
125.1
SLC4A3
ENSSSCG00000022846
ENSG00000114923
Solute carrier family 4 member 3
Tissue enhanced
Detected in many
brain:
29.6
cartilage:
21.2
heart:
43.0
SLC4A4
ENSSSCG00000008943
ENSG00000080493
Electrogenic sodium bicarbonate cotransporter 1
Tissue enhanced
Detected in many
brain:
40.8
gallbladder:
56.3
kidney:
58.8
SLC4A5
ENSSSCG00000027320
ENSG00000188687
Electrogenic sodium bicarbonate cotransporter 4
Tissue enriched
Detected in many
choroid plexus:
86.9
SLC4A7
ENSSSCG00000011218
ENSG00000033867
Solute carrier family 4 member 7
Low tissue specificity
Detected in all
SLC50A1
ENSSSCG00000006529
ENSG00000169241
Solute carrier family 50 member 1
Tissue enhanced
Detected in all
male glands:
48.7
SLC51A
ENSSSCG00000011846
ENSG00000163959
Organic solute transporter subunit alpha
Tissue enhanced
Detected in all
small intestine:
36.5
SLC51B
ENSSSCG00000004923
ENSG00000186198
Solute carrier family 51 beta subunit
Tissue enhanced
Detected in all
small intestine:
59.0
SLC52A3
ENSSSCG00000007199
ENSG00000101276
Solute carrier family 52 member 3
Tissue enhanced
Detected in all
male glands:
43.8
SLC5A10
ENSSSCG00000018049
ENSG00000154025
Sodium/glucose cotransporter 5
Low tissue specificity
Detected in all
SLC5A11
ENSSSCG00000033071
ENSG00000158865
Sodium/myo-inositol cotransporter 2
Low tissue specificity
Detected in all
SLC5A2
ENSSSCG00000024058
ENSG00000140675
Solute carrier family 5 member 2
Tissue enriched
Detected in all
kidney:
43.1
SLC5A3
ENSSSCG00000034167
ENSG00000198743
Solute carrier family 5 member 3
Tissue enhanced
Detected in all
kidney:
63.8
male glands:
116.8
SLC5A4
ENSSSCG00000010039
ENSG00000100191
Solute carrier family 5 member 4
Tissue enhanced
Detected in all
brain:
17.0
pineal gland:
16.9
SLC5A6
ENSSSCG00000008550
ENSG00000138074
Solute carrier family 5 member 6
Tissue enhanced
Detected in all
liver:
51.1
SLC5A8
ENSSSCG00000000871
ENSG00000256870
Sodium-coupled monocarboxylate transporter 1
Tissue enriched
Detected in all
male glands:
106.7
SLC6A1
ENSSSCG00000011577
ENSG00000157103
Solute carrier family 6 member 1
Group enriched
Detected in many
brain:
52.1
retina:
40.8
SLC6A15
ENSSSCG00000000936
ENSG00000072041
Solute carrier family 6 member 15
Low tissue specificity
Detected in all
SLC6A17
ENSSSCG00000006811
ENSG00000197106
Solute carrier family 6 member 17
Tissue enhanced
Detected in many
brain:
42.8
SLC6A20
ENSSSCG00000028643
ENSG00000163817
Solute carrier family 6 member 20
Tissue enhanced
Detected in all
brain:
42.0
choroid plexus:
64.0
SLC6A4
ENSSSCG00000017797
ENSG00000108576
Solute carrier family 6 member 4
Low tissue specificity
Detected in all
SLC6A6
ENSSSCG00000011600
ENSG00000131389
Sodium- and chloride-dependent taurine transporter
Tissue enriched
Detected in many
retina:
86.0
SLC6A7
ENSSSCG00000014447
ENSG00000011083
Solute carrier family 6 member 7
Group enriched
Detected in many
brain:
24.8
male glands:
8.0
stomach:
25.2
SLC6A8
ENSSSCG00000012771
ENSG00000130821
Sodium- and chloride-dependent creatine transporter 1
Low tissue specificity
Detected in many
SLC6A9
ENSSSCG00000039770
ENSG00000196517
Solute carrier family 6 member 9
Tissue enhanced
Detected in many
brain:
47.7
retina:
21.4
SLC7A1
ENSSSCG00000029456
ENSG00000139514
High affinity cationic amino acid transporter 1
Tissue enhanced
Detected in many
cartilage:
40.4
skin:
41.9
SLC7A10
ENSSSCG00000002864
ENSG00000130876
Solute carrier family 7 member 10
Tissue enhanced
Detected in many
brain:
15.2
mesothelial tissue:
9.5
synovial tissue:
8.0
vagus nerve:
12.3
SLC7A2
ENSSSCG00000006987
ENSG00000003989
Cationic amino acid transporter 2
Tissue enriched
Detected in many
liver:
87.6
SLC7A3
ENSSSCG00000024346
ENSG00000165349
Cationic amino acid transporter 3
Tissue enhanced
Detected in all
ductus deferens:
21.8
SLC7A5
ENSSSCG00000032996
ENSG00000103257
Solute carrier family 7 member 5
Tissue enhanced
Detected in many
lens:
41.8
male glands:
144.5
SLC7A6
ENSSSCG00000034835
ENSG00000103064
Solute carrier family 7 member 6
Low tissue specificity
Detected in all
SLC7A6OS
ENSSSCG00000033167
ENSG00000103061
Solute carrier family 7 member 6 opposite strand
Low tissue specificity
Detected in all
SLC7A7
ENSSSCG00000002041
ENSG00000155465
Y+L amino acid transporter 1
Tissue enhanced
Detected in many
kidney:
72.2
SLC7A8
ENSSSCG00000002032
ENSG00000092068
Solute carrier family 7 member 8
Tissue enhanced
Detected in many
cervix:
45.4
kidney:
72.3
SLC7A9
ENSSSCG00000022948
ENSG00000021488
B(0,+)-type amino acid transporter 1
Tissue enhanced
Detected in all
kidney:
28.4
small intestine:
44.6
SLC8A1
ENSSSCG00000036418
ENSG00000183023
Solute carrier family 8 member A1
Tissue enhanced
Detected in many
heart:
71.3
SLC8A2
ENSSSCG00000029567
ENSG00000118160
Solute carrier family 8 member A2
Tissue enriched
Detected in many
brain:
33.4
SLC8A3
ENSSSCG00000002315
ENSG00000100678
Solute carrier family 8 member A3
Tissue enhanced
Detected in many
brain:
19.5
cartilage:
43.4
skeletal muscle:
17.7
SLC8B1
ENSSSCG00000009880
ENSG00000089060
Solute carrier family 8 member B1
Tissue enhanced
Detected in all
lymphoid tissue:
45.1
SLC9A1
ENSSSCG00000003569
ENSG00000090020
Sodium/hydrogen exchanger 1
Tissue enhanced
Detected in many
salivary gland:
58.6
stomach:
67.9
SLC9A2
ENSSSCG00000008153
ENSG00000115616
Sodium/hydrogen exchanger 2 precursor
Tissue enhanced
Detected in all
large intestine:
27.8
stomach:
41.3
SLC9A3R1
ENSSSCG00000017232
ENSG00000109062
Na(+)/H(+) exchange regulatory cofactor NHE-RF1
Tissue enhanced
Detected in many
kidney:
85.7
SLC9A3R2
ENSSSCG00000008038
ENSG00000065054
Na(+)/H(+) exchange regulatory cofactor NHE-RF2
Low tissue specificity
Detected in all
SLC9A5
ENSSSCG00000002783
ENSG00000135740
Solute carrier family 9 member A5
Tissue enhanced
Detected in many
brain:
27.5
SLC9A6
ENSSSCG00000012698
ENSG00000198689
Solute carrier family 9 member A6
Tissue enhanced
Detected in all
brain:
28.0
SLC9A7
ENSSSCG00000012266
ENSG00000065923
Solute carrier family 9 member A7
Tissue enhanced
Detected in many
brain:
38.1
SLC9A8
ENSSSCG00000007466
ENSG00000197818
Solute carrier family 9 member A8
Low tissue specificity
Detected in all
SLC9A9
ENSSSCG00000011686
ENSG00000181804
Solute carrier family 9 member A9
Low tissue specificity
Detected in all
SLC9B2
ENSSSCG00000028101
ENSG00000164038
Solute carrier family 9 member B2
Tissue enhanced
Detected in many
dura mater:
29.9
heart:
30.6
SLCO1A2
ENSSSCG00000000584
ENSG00000084453
Solute carrier organic anion transporter family member 1A2
Tissue enhanced
Detected in many
brain:
34.3
choroid plexus:
35.1
upper respiratory system:
86.1
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