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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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7
8
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLCO2A1
ENSSSCG00000011641
ENSG00000174640
Solute carrier organic anion transporter family member 2A1
Low tissue specificity
Detected in many
SLCO2B1
ENSSSCG00000014851
ENSG00000137491
Solute carrier organic anion transporter family member 2B1
Tissue enhanced
Detected in many
liver:
74.6
SLCO3A1
ENSSSCG00000002263
ENSG00000176463
Solute carrier organic anion transporter family member 3A1
Tissue enhanced
Detected in all
adrenal gland:
62.6
choroid plexus:
51.9
SLCO4A1
ENSSSCG00000039419
ENSG00000101187
Solute carrier organic anion transporter family member 4A1
Tissue enhanced
Detected in many
epididymis:
59.5
male glands:
33.9
mesothelial tissue:
25.0
SLF1
ENSSSCG00000014163
ENSG00000133302
SMC5-SMC6 complex localization factor 1
Tissue enhanced
Detected in all
epididymis:
29.6
SLF2
ENSSSCG00000037592
ENSG00000119906
SMC5-SMC6 complex localization factor 2
Low tissue specificity
Detected in all
SLFN14
ENSSSCG00000031114
ENSG00000236320
Schlafen family member 14
Low tissue specificity
Detected in all
SLFNL1
ENSSSCG00000003972
ENSG00000171790
Schlafen like 1
Tissue enhanced
Detected in many
testis:
42.8
SLIRP
ENSSSCG00000028167
ENSG00000119705
SRA stem-loop-interacting RNA-binding protein, mitochondrial
Tissue enhanced
Detected in all
lens:
62.0
SLIT2
ENSSSCG00000008749
ENSG00000145147
Slit guidance ligand 2
Low tissue specificity
Detected in many
SLIT3
ENSSSCG00000017012
ENSG00000184347
Slit guidance ligand 3
Tissue enhanced
Detected in many
lens:
68.2
penis:
66.1
SLITRK3
ENSSSCG00000011736
ENSG00000121871
SLIT and NTRK like family member 3
Group enriched
Detected in some
brain:
19.7
retina:
9.6
synovial tissue:
20.3
SLK
ENSSSCG00000010606
ENSG00000065613
STE20 like kinase
Low tissue specificity
Detected in all
SLMAP
ENSSSCG00000038873
ENSG00000163681
Sarcolemma associated protein
Tissue enhanced
Detected in all
smooth muscle:
94.3
SLN
ENSSSCG00000029651
ENSG00000170290
Sarcolipin
Tissue enriched
Detected in some
skeletal muscle:
333.6
SLPI
ENSSSCG00000039573
ENSG00000124107
Antileukoproteinase
Tissue enhanced
Detected in many
adipose tissue:
31.8
aorta:
33.3
fallopian tube:
64.8
SLTM
ENSSSCG00000004592
ENSG00000137776
SAFB like transcription modulator
Low tissue specificity
Detected in all
SLU7
ENSSSCG00000017033
ENSG00000164609
SLU7 homolog, splicing factor
Low tissue specificity
Detected in all
SLX4
ENSSSCG00000007954
ENSG00000188827
SLX4 structure-specific endonuclease subunit
Tissue enhanced
Detected in all
testis:
33.2
SLX4IP
ENSSSCG00000007066
ENSG00000149346
SLX4 interacting protein
Low tissue specificity
Detected in all
SMAD1
ENSSSCG00000009040
ENSG00000170365
Mothers against decapentaplegic homolog 1
Low tissue specificity
Detected in all
SMAD2
ENSSSCG00000004505
ENSG00000175387
Mothers against decapentaplegic homolog 2
Low tissue specificity
Detected in all
SMAD3
ENSSSCG00000004952
ENSG00000166949
Mothers against decapentaplegic homolog 3
Low tissue specificity
Detected in all
SMAD4
ENSSSCG00000004524
ENSG00000141646
Mothers against decapentaplegic homolog 4
Low tissue specificity
Detected in all
SMAD5
ENSSSCG00000014319
ENSG00000113658
SMAD family member 5
Low tissue specificity
Detected in all
SMAD6
ENSSSCG00000004948
ENSG00000137834
SMAD family member 6
Low tissue specificity
Detected in many
SMAD7
ENSSSCG00000004507
ENSG00000101665
Mothers against decapentaplegic homolog 7
Low tissue specificity
Detected in all
SMAD9
ENSSSCG00000009357
ENSG00000120693
Mothers against decapentaplegic homolog 9
Low tissue specificity
Detected in many
SMAGP
ENSSSCG00000036904
ENSG00000170545
Small cell adhesion glycoprotein
Low tissue specificity
Detected in all
SMAP1
ENSSSCG00000004276
ENSG00000112305
Small ArfGAP 1
Low tissue specificity
Detected in all
SMAP2
ENSSSCG00000003983
ENSG00000084070
Stromal membrane-associated protein 2
Tissue enhanced
Detected in all
brain:
42.0
SMARCA1
ENSSSCG00000012649
ENSG00000102038
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Tissue enhanced
Detected in all
ovary:
104.0
SMARCA2
ENSSSCG00000005232
ENSG00000080503
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
Low tissue specificity
Detected in all
SMARCA4
ENSSSCG00000013629
ENSG00000127616
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Low tissue specificity
Detected in all
SMARCA5
ENSSSCG00000009047
ENSG00000153147
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
Low tissue specificity
Detected in all
SMARCAD1
ENSSSCG00000009193
ENSG00000163104
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
Low tissue specificity
Detected in all
SMARCAL1
ENSSSCG00000035501
ENSG00000138375
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1
Low tissue specificity
Detected in all
SMARCB1
ENSSSCG00000010070
ENSG00000099956
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
Low tissue specificity
Detected in all
SMARCC1
ENSSSCG00000011340
ENSG00000173473
SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1
Low tissue specificity
Detected in all
SMARCC2
ENSSSCG00000000382
ENSG00000139613
SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Low tissue specificity
Detected in all
SMARCD1
ENSSSCG00000000215
ENSG00000066117
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Low tissue specificity
Detected in all
SMARCD3
ENSSSCG00000016435
ENSG00000082014
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Low tissue specificity
Detected in many
SMARCE1
ENSSSCG00000039137
ENSG00000073584
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Low tissue specificity
Detected in all
SMC1A
ENSSSCG00000012325
ENSG00000072501
Structural maintenance of chromosomes 1A
Tissue enhanced
Detected in all
liver:
76.5
SMC2
ENSSSCG00000005403
ENSG00000136824
Structural maintenance of chromosomes 2
Tissue enhanced
Detected in all
lymphoid tissue:
44.7
SMC3
ENSSSCG00000010625
ENSG00000108055
Structural maintenance of chromosomes 3
Low tissue specificity
Detected in all
SMC4
ENSSSCG00000011731
ENSG00000113810
Structural maintenance of chromosomes 4
Tissue enhanced
Detected in all
lymphoid tissue:
62.8
SMC5
ENSSSCG00000005255
ENSG00000198887
Structural maintenance of chromosomes 5
Low tissue specificity
Detected in all
SMC6
ENSSSCG00000008614
ENSG00000163029
Structural maintenance of chromosomes 6
Tissue enhanced
Detected in all
epididymis:
57.1
lymphoid tissue:
61.4
SMCHD1
ENSSSCG00000029030
ENSG00000101596
Structural maintenance of chromosomes flexible hinge domain containing 1
Low tissue specificity
Detected in all
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