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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
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8
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MT
Unmapped
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLC36A1
ENSSSCG00000035442
ENSG00000123643
Solute carrier family 36 member 1
Tissue enhanced
Detected in all
brain:
47.3
SLC36A3
ENSSSCG00000038877
ENSG00000186334
Solute carrier family 36 member 3
Low tissue specificity
Detected in all
SLC36A4
ENSSSCG00000024933
ENSG00000180773
Solute carrier family 36 member 4
Low tissue specificity
Detected in all
SLC37A1
ENSSSCG00000012087
ENSG00000160190
Solute carrier family 37 member 1
Low tissue specificity
Detected in all
SLC37A2
ENSSSCG00000022536
ENSG00000134955
Solute carrier family 37 member 2
Tissue enhanced
Detected in all
choroid plexus:
58.4
SLC37A3
ENSSSCG00000032266
ENSG00000157800
Sugar phosphate exchanger 3
Tissue enhanced
Detected in all
lymphoid tissue:
43.2
SLC37A4
ENSSSCG00000015105
ENSG00000137700
Glucose-6-phosphate exchanger SLC37A4
Tissue enhanced
Detected in all
epididymis:
35.1
liver:
51.8
SLC38A1
ENSSSCG00000000807
ENSG00000111371
Solute carrier family 38 member 1
Tissue enhanced
Detected in many
male glands:
80.9
pineal gland:
84.3
retina:
71.6
SLC38A10
ENSSSCG00000022317
ENSG00000157637
Solute carrier family 38 member 10
Low tissue specificity
Detected in all
SLC38A2
ENSSSCG00000000808
ENSG00000134294
Sodium-coupled neutral amino acid transporter 2
Low tissue specificity
Detected in all
SLC38A3
ENSSSCG00000011397
ENSG00000188338
Solute carrier family 38 member 3
Group enriched
Detected in many
choroid plexus:
43.4
liver:
136.6
retina:
56.5
SLC38A5
ENSSSCG00000025981
ENSG00000017483
Sodium-coupled neutral amino acid transporter 5
Tissue enhanced
Detected in all
lens:
33.0
SLC38A6
ENSSSCG00000005092
ENSG00000139974
Probable sodium-coupled neutral amino acid transporter 6
Low tissue specificity
Detected in all
SLC38A7
ENSSSCG00000040881
ENSG00000103042
Solute carrier family 38 member 7
Low tissue specificity
Detected in all
SLC38A9
ENSSSCG00000030343
ENSG00000177058
Solute carrier family 38 member 9
Low tissue specificity
Detected in all
SLC39A1
ENSSSCG00000006561
ENSG00000143570
Solute carrier family 39 member 1
Low tissue specificity
Detected in all
SLC39A10
ENSSSCG00000031954
ENSG00000196950
Solute carrier family 39 member 10
Tissue enhanced
Detected in all
brain:
37.7
SLC39A11
ENSSSCG00000037754
ENSG00000133195
Solute carrier family 39 member 11
Tissue enhanced
Detected in many
male glands:
53.7
SLC39A13
ENSSSCG00000013238
ENSG00000165915
Solute carrier family 39 member 13
Low tissue specificity
Detected in all
SLC39A3
ENSSSCG00000033968
ENSG00000141873
Solute carrier family 39 member 3
Tissue enhanced
Detected in all
epididymis:
53.8
SLC39A4
ENSSSCG00000005905
ENSG00000147804
Solute carrier family 39 member 4
Tissue enhanced
Detected in all
small intestine:
27.2
SLC39A6
ENSSSCG00000027455
ENSG00000141424
Solute carrier family 39 member 6
Low tissue specificity
Detected in all
SLC39A7
ENSSSCG00000001475
ENSG00000112473
Zinc transporter SLC39A7 precursor
Tissue enhanced
Detected in all
male glands:
99.4
SLC39A8
ENSSSCG00000009169
ENSG00000138821
Solute carrier family 39 member 8
Tissue enhanced
Detected in many
male glands:
64.5
mesothelial tissue:
55.2
upper respiratory system:
35.1
SLC39A9
ENSSSCG00000028600
ENSG00000029364
Solute carrier family 39 member 9
Low tissue specificity
Detected in all
SLC3A2
ENSSSCG00000022404
ENSG00000168003
Solute carrier family 3 member 2
Low tissue specificity
Detected in all
SLC40A1
ENSSSCG00000027157
ENSG00000138449
Solute carrier family 40 member 1
Tissue enhanced
Detected in many
bone marrow:
62.4
liver:
70.2
lymphoid tissue:
58.0
SLC41A1
ENSSSCG00000020783
ENSG00000133065
Solute carrier family 41 member 1
Tissue enhanced
Detected in all
choroid plexus:
49.1
heart:
105.7
male glands:
64.7
SLC41A2
ENSSSCG00000000838
ENSG00000136052
Solute carrier family 41 member 2
Tissue enhanced
Detected in all
male glands:
41.9
SLC41A3
ENSSSCG00000001825
ENSG00000114544
Solute carrier family 41 member 3
Low tissue specificity
Detected in all
SLC43A1
ENSSSCG00000036359
ENSG00000149150
Solute carrier family 43 member 1
Low tissue specificity
Detected in all
SLC43A2
ENSSSCG00000024108
ENSG00000167703
Solute carrier family 43 member 2
Tissue enhanced
Detected in all
cartilage:
62.3
SLC43A3
ENSSSCG00000033998
ENSG00000134802
Solute carrier family 43 member 3
Low tissue specificity
Detected in all
SLC44A1
ENSSSCG00000005425
ENSG00000070214
Solute carrier family 44 member 1
Tissue enhanced
Detected in all
brain:
103.0
SLC44A2
ENSSSCG00000013639
ENSG00000129353
Solute carrier family 44 member 2
Low tissue specificity
Detected in all
SLC44A3
ENSSSCG00000006888
ENSG00000143036
Solute carrier family 44 member 3
Tissue enhanced
Detected in many
male glands:
32.7
SLC44A4
ENSSSCG00000001419
ENSG00000204385
Choline transporter-like protein 4
Tissue enhanced
Detected in many
gallbladder:
43.4
large intestine:
70.7
stomach:
57.5
upper respiratory system:
59.4
SLC44A5
ENSSSCG00000003777
ENSG00000137968
Solute carrier family 44 member 5
Tissue enhanced
Detected in many
brain:
22.1
heart:
14.9
skeletal muscle:
9.8
testis:
18.5
SLC45A2
ENSSSCG00000016821
ENSG00000164175
Solute carrier family 45 member 2
Tissue enhanced
Detected in all
liver:
30.6
SLC45A3
ENSSSCG00000026547
ENSG00000158715
Solute carrier family 45 member 3
Tissue enhanced
Detected in many
large intestine:
22.6
lymphoid tissue:
22.7
male glands:
19.5
stomach:
46.2
SLC45A4
ENSSSCG00000005930
ENSG00000022567
Solute carrier family 45 member 4
Low tissue specificity
Detected in all
SLC46A1
ENSSSCG00000023478
ENSG00000076351
Solute carrier family 46, member 1
Tissue enhanced
Detected in all
kidney:
37.1
SLC46A2
ENSSSCG00000005472
ENSG00000119457
Solute carrier family 46 member 2
Tissue enriched
Detected in many
epididymis:
84.4
SLC46A3
ENSSSCG00000009322
ENSG00000139508
Solute carrier family 46 member 3 precursor
Tissue enhanced
Detected in all
breast:
40.8
liver:
45.6
salivary gland:
40.3
SLC47A1
ENSSSCG00000033329
ENSG00000142494
Solute carrier family 47 member 1
Tissue enhanced
Detected in all
dura mater:
44.3
kidney:
26.8
SLC48A1
ENSSSCG00000036775
ENSG00000211584
Solute carrier family 48 member 1
Tissue enhanced
Detected in all
brain:
56.5
SLC49A3
ENSSSCG00000026084
ENSG00000169026
Solute carrier family 49 member 3
Low tissue specificity
Detected in many
SLC4A1
ENSSSCG00000017358
ENSG00000004939
Solute carrier family 4 member 1 (Diego blood group)
Low tissue specificity
Detected in all
SLC4A11
ENSSSCG00000007157
ENSG00000088836
Solute carrier family 4 member 11
Tissue enhanced
Detected in many
cornea:
94.2
kidney:
44.4
SLC4A1AP
ENSSSCG00000008549
ENSG00000163798
Solute carrier family 4 member 1 adaptor protein
Low tissue specificity
Detected in all
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