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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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15143 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
SLC27A3
ENSSSCG00000006569
ENSG00000143554
Solute carrier family 27 member 3
Tissue enhanced
Detected in many
epididymis:
18.0
mesothelial tissue:
14.5
SLC27A4
ENSSSCG00000005648
ENSG00000167114
Solute carrier family 27 member 4
Low tissue specificity
Detected in all
SLC27A5
ENSSSCG00000031449
ENSG00000083807
Solute carrier family 27 member 5
Tissue enriched
Detected in many
liver:
100.7
SLC27A6
ENSSSCG00000014257
ENSG00000113396
Solute carrier family 27 member 6
Tissue enhanced
Detected in many
choroid plexus:
22.6
kidney:
34.9
SLC28A1
ENSSSCG00000002632
ENSG00000156222
Sodium/nucleoside cotransporter 1
Low tissue specificity
Detected in all
SLC28A2
ENSSSCG00000004673
ENSG00000137860
Solute carrier family 28 member 2
Tissue enhanced
Detected in many
small intestine:
18.2
SLC29A1
ENSSSCG00000001700
ENSG00000112759
Solute carrier family 29 member 1 (Augustine blood group)
Low tissue specificity
Detected in all
SLC29A2
ENSSSCG00000012941
ENSG00000174669
Solute carrier family 29 member 2
Tissue enhanced
Detected in many
retina:
25.3
skeletal muscle:
13.3
SLC29A3
ENSSSCG00000010277
ENSG00000198246
Solute carrier family 29 member 3
Tissue enhanced
Detected in many
thyroid gland:
26.6
SLC29A4
ENSSSCG00000027768
ENSG00000164638
Solute carrier family 29 member 4
Tissue enhanced
Detected in many
adrenal gland:
17.6
brain:
17.6
SLC2A10
ENSSSCG00000007451
ENSG00000197496
Solute carrier family 2 member 10
Low tissue specificity
Detected in all
SLC2A13
ENSSSCG00000000783
ENSG00000151229
Solute carrier family 2 member 13
Tissue enhanced
Detected in many
brain:
24.0
SLC2A4
ENSSSCG00000023915
ENSG00000181856
Solute carrier family 2, facilitated glucose transporter member 4
Tissue enhanced
Detected in many
heart:
43.0
skeletal muscle:
81.6
SLC2A4RG
ENSSSCG00000037562
ENSG00000125520
SLC2A4 regulator
Tissue enhanced
Detected in all
lens:
41.2
SLC2A5
ENSSSCG00000039651
ENSG00000142583
Solute carrier family 2 member 5
Tissue enhanced
Detected in many
cornea:
20.4
epididymis:
45.8
testis:
25.5
SLC2A6
ENSSSCG00000024166
ENSG00000160326
Solute carrier family 2 member 6
Tissue enhanced
Detected in many
brain:
17.6
lymphoid tissue:
13.1
stomach:
18.4
SLC2A7
ENSSSCG00000003390
ENSG00000197241
Solute carrier family 2 member 7
Low tissue specificity
Detected in all
SLC2A8
ENSSSCG00000005610
ENSG00000136856
Solute carrier family 2 member 8
Tissue enhanced
Detected in all
epididymis:
25.8
testis:
28.2
SLC2A9
ENSSSCG00000031700
ENSG00000109667
Solute carrier family 2 member 9
Tissue enhanced
Detected in all
synovial tissue:
17.6
SLC30A1
ENSSSCG00000039472
ENSG00000170385
Zinc transporter 1
Tissue enhanced
Detected in all
choroid plexus:
35.7
SLC30A2
ENSSSCG00000026386
ENSG00000158014
Zinc transporter 2
Tissue enriched
Detected in some
male glands:
158.7
SLC30A4
ENSSSCG00000004668
ENSG00000104154
Zinc transporter 4
Low tissue specificity
Detected in many
SLC30A5
ENSSSCG00000022430
ENSG00000145740
Zinc transporter 5
Tissue enhanced
Detected in all
ovary:
64.6
SLC30A6
ENSSSCG00000008518
ENSG00000152683
Zinc transporter 6
Low tissue specificity
Detected in all
SLC30A7
ENSSSCG00000006860
ENSG00000162695
Zinc transporter 7
Tissue enhanced
Detected in all
male glands:
48.2
SLC30A9
ENSSSCG00000008801
ENSG00000014824
Zinc transporter 9
Low tissue specificity
Detected in all
SLC31A1
ENSSSCG00000034278
ENSG00000136868
High affinity copper uptake protein 1
Low tissue specificity
Detected in all
SLC31A2
ENSSSCG00000023714
ENSG00000136867
Probable low affinity copper uptake protein 2
Tissue enhanced
Detected in many
esophagus:
26.6
salivary gland:
89.5
upper respiratory system:
21.7
SLC34A2
ENSSSCG00000008758
ENSG00000157765
Sodium-dependent phosphate transport protein 2B
Tissue enriched
Detected in many
lung:
93.5
SLC34A3
ENSSSCG00000040105
ENSG00000198569
Solute carrier family 34 member 3
Tissue enriched
Detected in many
kidney:
76.1
SLC35A1
ENSSSCG00000004304
ENSG00000164414
Solute carrier family 35 member A1
Low tissue specificity
Detected in all
SLC35A2
ENSSSCG00000024841
ENSG00000102100
Solute carrier family 35 member A2
Low tissue specificity
Detected in all
SLC35A3
ENSSSCG00000006871
ENSG00000117620
UDP-N-acetylglucosamine transporter
Tissue enhanced
Detected in all
male glands:
43.8
SLC35A4
ENSSSCG00000014367
ENSG00000176087
Probable UDP-sugar transporter protein SLC35A4
Low tissue specificity
Detected in all
SLC35A5
ENSSSCG00000011929
ENSG00000138459
Solute carrier family 35 member A5
Low tissue specificity
Detected in all
SLC35B1
ENSSSCG00000033731
ENSG00000121073
Solute carrier family 35 member B1
Low tissue specificity
Detected in all
SLC35B2
ENSSSCG00000001702
ENSG00000157593
Solute carrier family 35 member B2
Tissue enhanced
Detected in all
male glands:
37.0
SLC35B3
ENSSSCG00000001033
ENSG00000124786
Solute carrier family 35 member B3
Low tissue specificity
Detected in all
SLC35B4
ENSSSCG00000016541
ENSG00000205060
Solute carrier family 35 member B4
Low tissue specificity
Detected in all
SLC35C1
ENSSSCG00000025647
ENSG00000181830
GDP-fucose transporter 1
Tissue enhanced
Detected in all
male glands:
33.3
SLC35C2
ENSSSCG00000022777
ENSG00000080189
Solute carrier family 35, member C2
Low tissue specificity
Detected in all
SLC35D1
ENSSSCG00000032043
ENSG00000116704
Solute carrier family 35 member D1
Tissue enhanced
Detected in all
large intestine:
33.3
liver:
26.4
SLC35E1
ENSSSCG00000013861
ENSG00000127526
Solute carrier family 35 member E1
Low tissue specificity
Detected in all
SLC35E2B
ENSSSCG00000003353
ENSG00000189339
Solute carrier family 35 member E2B
Tissue enhanced
Detected in all
liver:
48.9
SLC35E3
ENSSSCG00000000487
ENSG00000175782
Solute carrier family 35 member E3
Low tissue specificity
Detected in all
SLC35E4
ENSSSCG00000010012
ENSG00000100036
Solute carrier family 35 member E4
Tissue enhanced
Detected in many
brain:
23.8
SLC35F2
ENSSSCG00000015001
ENSG00000110660
Solute carrier family 35 member F2
Low tissue specificity
Detected in all
SLC35F5
ENSSSCG00000015709
ENSG00000115084
Solute carrier family 35 member F5
Tissue enhanced
Detected in all
male glands:
50.8
SLC35F6
ENSSSCG00000008562
ENSG00000213699
Solute carrier family 35 member F6
Low tissue specificity
Detected in all
SLC35G1
ENSSSCG00000027230
ENSG00000176273
Solute carrier family 35 member G1
Tissue enhanced
Detected in many
dura mater:
23.4
small intestine:
16.5
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