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Keyword
Chromosome
1
2
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6
7
8
9
10
11
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16395 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DHX8
ENSSSCG00000017378
ENSG00000067596
DEAH-box helicase 8
Low tissue specificity
Detected in all
DHX9
ENSSSCG00000026806
ENSG00000135829
DExH-box helicase 9
Low tissue specificity
Detected in all
DIABLO
ENSSSCG00000009799
ENSG00000184047,ENSG00000284934
Diablo homolog, mitochondrial
Tissue enhanced
Detected in all
testis:
78.6
DIAPH2
ENSSSCG00000012474
ENSG00000147202
Diaphanous related formin 2
Low tissue specificity
Detected in all
DIAPH3
ENSSSCG00000009448
ENSG00000139734
Diaphanous related formin 3
Tissue enhanced
Detected in many
lymphoid tissue:
19.2
mouth:
12.1
testis:
21.5
DICER1
ENSSSCG00000028225
ENSG00000100697
Endoribonuclease Dicer
Low tissue specificity
Detected in all
DIDO1
ENSSSCG00000033946
ENSG00000101191
Death inducer-obliterator 1
Low tissue specificity
Detected in all
DIEXF
ENSSSCG00000015611
ENSG00000117597
Digestive organ expansion factor homolog (zebrafish)
Low tissue specificity
Detected in all
DIMT1
ENSSSCG00000031990
ENSG00000086189
Probable dimethyladenosine transferase
Low tissue specificity
Detected in all
DIO2
ENSSSCG00000040638
ENSG00000211448
Type II iodothyronine deiodinase
Tissue enhanced
Detected in many
mouth:
29.3
pituitary gland:
33.9
thyroid gland:
45.9
DIO3
ENSSSCG00000036990
ENSG00000197406
Iodothyronine deiodinase 3
Tissue enhanced
Detected in many
brain:
11.6
skin:
12.5
DIP2A
ENSSSCG00000035657
ENSG00000160305
Disco interacting protein 2 homolog A
Low tissue specificity
Detected in all
DIP2B
ENSSSCG00000029196
ENSG00000066084
Disco interacting protein 2 homolog B
Low tissue specificity
Detected in all
DIP2C
ENSSSCG00000011163
ENSG00000151240
Disco interacting protein 2 homolog C
Low tissue specificity
Detected in all
DIRAS1
ENSSSCG00000038013
ENSG00000176490
DIRAS family GTPase 1
Tissue enhanced
Detected in many
brain:
30.6
pineal gland:
15.5
DIRAS3
ENSSSCG00000003797
ENSG00000162595
GTP-binding protein Di-Ras3
Group enriched
Detected in some
brain:
96.0
pineal gland:
220.4
pituitary gland:
68.6
DIRC2
ENSSSCG00000036766
ENSG00000138463
Disrupted in renal carcinoma 2
Low tissue specificity
Detected in all
DIS3
ENSSSCG00000009460
ENSG00000083520
DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease
Low tissue specificity
Detected in all
DIS3L
ENSSSCG00000004941
ENSG00000166938
DIS3 like exosome 3'-5' exoribonuclease
Low tissue specificity
Detected in all
DIS3L2
ENSSSCG00000022177
ENSG00000144535
DIS3-like exonuclease 2
Tissue enhanced
Detected in all
male glands:
71.0
DISC1
ENSSSCG00000010170
ENSG00000162946
Disrupted in schizophrenia 1
Tissue enhanced
Detected in all
lens:
47.8
DISP1
ENSSSCG00000035479
ENSG00000154309
Dispatched RND transporter family member 1
Tissue enhanced
Detected in all
cartilage:
65.0
DIXDC1
ENSSSCG00000015036
ENSG00000150764
DIX domain containing 1
Tissue enhanced
Detected in all
brain:
43.0
lens:
38.7
DKC1
ENSSSCG00000012823
ENSG00000130826
H/ACA ribonucleoprotein complex subunit 4
Low tissue specificity
Detected in all
DKK1
ENSSSCG00000010428
ENSG00000107984
Dickkopf-related protein 1 precursor
Group enriched
Detected in some
lens:
15.9
male glands:
27.4
DKK2
ENSSSCG00000032094
ENSG00000155011
Dickkopf WNT signaling pathway inhibitor 2
Tissue enhanced
Detected in many
cornea:
29.4
ovary:
44.1
DKK3
ENSSSCG00000013401
ENSG00000050165
Dickkopf-related protein 3 precursor
Tissue enhanced
Detected in many
heart:
96.2
ovary:
101.1
DKK4
ENSSSCG00000007029
ENSG00000104371
Dickkopf WNT signaling pathway inhibitor 4
Tissue enhanced
Detected in many
cartilage:
10.7
DKKL1
ENSSSCG00000038579
ENSG00000104901
Dickkopf like acrosomal protein 1
Tissue enriched
Detected in all
testis:
104.9
DLAT
ENSSSCG00000015030
ENSG00000150768
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial precursor
Low tissue specificity
Detected in all
DLC1
ENSSSCG00000006970
ENSG00000164741
DLC1 Rho GTPase activating protein
Low tissue specificity
Detected in many
DLD
ENSSSCG00000015443
ENSG00000091140
Dihydrolipoyl dehydrogenase, mitochondrial precursor
Tissue enhanced
Detected in all
skeletal muscle:
65.7
DLEC1
ENSSSCG00000011249
ENSG00000008226
Deleted in lung and esophageal cancer 1
Tissue enhanced
Detected in many
fallopian tube:
22.8
retina:
23.7
DLG1
ENSSSCG00000011833
ENSG00000075711
Discs large MAGUK scaffold protein 1
Low tissue specificity
Detected in all
DLG2
ENSSSCG00000014904
ENSG00000150672
Discs large MAGUK scaffold protein 2
Group enriched
Detected in many
brain:
45.5
pineal gland:
23.4
retina:
15.3
DLG3
ENSSSCG00000012375
ENSG00000082458
Discs large MAGUK scaffold protein 3
Tissue enhanced
Detected in many
male glands:
43.5
DLG4
ENSSSCG00000024285
ENSG00000132535
Discs large MAGUK scaffold protein 4
Tissue enhanced
Detected in all
brain:
59.7
pineal gland:
35.1
retina:
43.1
DLG5
ENSSSCG00000026268
ENSG00000151208
Discs large MAGUK scaffold protein 5
Tissue enhanced
Detected in all
epididymis:
78.0
DLGAP4
ENSSSCG00000007317
ENSG00000080845
DLG associated protein 4
Low tissue specificity
Detected in all
DLGAP5
ENSSSCG00000005056
ENSG00000126787
DLG associated protein 5
Low tissue specificity
Detected in all
DLK2
ENSSSCG00000001682
ENSG00000171462
Protein delta homolog 2
Tissue enhanced
Detected in many
esophagus:
16.7
male glands:
13.9
mouth:
26.2
skin:
14.7
DLL1
ENSSSCG00000027726
ENSG00000198719
Delta like canonical Notch ligand 1
Tissue enhanced
Detected in many
lymphoid tissue:
38.3
DLL4
ENSSSCG00000004755
ENSG00000128917
Delta-like protein 4 precursor
Low tissue specificity
Detected in many
DLST
ENSSSCG00000002374
ENSG00000119689
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial
Low tissue specificity
Detected in all
DLX5
ENSSSCG00000038838
ENSG00000105880
Homeobox protein DLX-5
Tissue enhanced
Detected in many
cartilage:
27.8
dura mater:
19.6
endometrium:
38.9
DLX6
ENSSSCG00000033314
ENSG00000006377
Distal-less homeobox 6
Tissue enhanced
Detected in some
brain:
22.5
dura mater:
10.8
endometrium:
29.0
DMAC1
ENSSSCG00000005196
ENSG00000137038
Distal membrane arm assembly complex 1
Tissue enhanced
Detected in all
lens:
38.3
DMAC2
ENSSSCG00000032711
ENSG00000105341
Distal membrane arm assembly complex 2
Low tissue specificity
Detected in all
DMAP1
ENSSSCG00000034096
ENSG00000178028
DNA methyltransferase 1-associated protein 1
Low tissue specificity
Detected in all
DMD
ENSSSCG00000028148
ENSG00000198947
Dystrophin
Tissue enhanced
Detected in many
skeletal muscle:
82.6
vagus nerve:
69.3
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