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Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Subclass
Class
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Disease
Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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16395 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
DERA
ENSSSCG00000000599
ENSG00000023697
Deoxyribose-phosphate aldolase
Low tissue specificity
Detected in all
DERL1
ENSSSCG00000033690
ENSG00000136986
Derlin-1
Low tissue specificity
Detected in all
DERL3
ENSSSCG00000039626
ENSG00000099958
Derlin 3
Tissue enhanced
Detected in many
male glands:
18.7
DES
ENSSSCG00000020785
ENSG00000175084
Desmin
Tissue enhanced
Detected in many
skeletal muscle:
301.6
smooth muscle:
547.0
urinary bladder:
220.0
DESI2
ENSSSCG00000010876
ENSG00000121644
Desumoylating isopeptidase 2
Low tissue specificity
Detected in all
DET1
ENSSSCG00000005103
ENSG00000140543
DET1, COP1 ubiquitin ligase partner
Low tissue specificity
Detected in all
DEUP1
ENSSSCG00000014943
ENSG00000165325
Deuterosome assembly protein 1
Tissue enhanced
Detected in many
fallopian tube:
18.7
testis:
51.4
DEXI
ENSSSCG00000037224
ENSG00000182108
Dexi homolog
Tissue enhanced
Detected in all
heart:
103.1
DFFA
ENSSSCG00000003404
ENSG00000160049
DNA fragmentation factor subunit alpha
Low tissue specificity
Detected in all
DFFB
ENSSSCG00000021436
ENSG00000169598
DNA fragmentation factor subunit beta
Low tissue specificity
Detected in all
DGAT1
ENSSSCG00000005918
ENSG00000185000
Diacylglycerol O-acyltransferase 1
Tissue enhanced
Detected in all
small intestine:
35.6
DGCR2
ENSSSCG00000010111
ENSG00000070413
DiGeorge syndrome critical region gene 2
Low tissue specificity
Detected in all
DGCR8
ENSSSCG00000010135
ENSG00000128191
Microprocessor complex subunit DGCR8
Low tissue specificity
Detected in all
DGKA
ENSSSCG00000000370
ENSG00000065357
Diacylglycerol kinase alpha
Tissue enhanced
Detected in all
lymphoid tissue:
66.1
DGKD
ENSSSCG00000009432
ENSG00000077044
Diacylglycerol kinase delta
Low tissue specificity
Detected in all
DGKE
ENSSSCG00000017615
ENSG00000153933
Diacylglycerol kinase epsilon
Low tissue specificity
Detected in all
DGKG
ENSSSCG00000022550
ENSG00000058866
Diacylglycerol kinase gamma
Tissue enhanced
Detected in many
brain:
47.0
thyroid gland:
27.8
DGKH
ENSSSCG00000009431
ENSG00000102780
Diacylglycerol kinase eta
Tissue enhanced
Detected in all
ductus deferens:
44.1
DGKQ
ENSSSCG00000027286
ENSG00000145214
Diacylglycerol kinase theta
Tissue enhanced
Detected in all
stomach:
31.0
DGKZ
ENSSSCG00000013259
ENSG00000149091
Diacylglycerol kinase zeta
Low tissue specificity
Detected in all
DGUOK
ENSSSCG00000008293
ENSG00000114956
Deoxyguanosine kinase
Low tissue specificity
Detected in all
DHCR24
ENSSSCG00000027525
ENSG00000116133
Delta(24)-sterol reductase
Tissue enhanced
Detected in all
liver:
83.6
ovary:
72.7
DHCR7
ENSSSCG00000021181
ENSG00000172893
7-dehydrocholesterol reductase
Tissue enhanced
Detected in all
liver:
65.5
ovary:
37.3
DHDDS
ENSSSCG00000033516
ENSG00000117682
Dehydrodolichyl diphosphate synthase complex subunit DHDDS
Tissue enhanced
Detected in all
large intestine:
44.1
DHDH
ENSSSCG00000003158
ENSG00000104808
Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase
Tissue enriched
Detected in many
lens:
112.6
DHPS
ENSSSCG00000013723
ENSG00000095059
Deoxyhypusine synthase
Low tissue specificity
Detected in many
DHRS1
ENSSSCG00000001991
ENSG00000157379
Dehydrogenase/reductase 1
Low tissue specificity
Detected in all
DHRS11
ENSSSCG00000017690
ENSG00000278535
Dehydrogenase/reductase SDR family member 11
Tissue enhanced
Detected in all
heart:
33.3
large intestine:
65.0
DHRS12
ENSSSCG00000033483
ENSG00000102796
Dehydrogenase/reductase 12
Tissue enhanced
Detected in all
adrenal gland:
27.9
DHRS13
ENSSSCG00000017778
ENSG00000167536
Dehydrogenase/reductase 13
Low tissue specificity
Detected in all
DHRS3
ENSSSCG00000003439
ENSG00000162496
Dehydrogenase/reductase 3
Low tissue specificity
Detected in all
DHRS4
ENSSSCG00000002013
ENSG00000157326,ENSG00000187630
Dehydrogenase/reductase SDR family member 4
Tissue enriched
Detected in many
testis:
279.6
DHRS7
ENSSSCG00000005083
ENSG00000100612
Dehydrogenase/reductase SDR family member 7
Low tissue specificity
Detected in all
DHRS7B
ENSSSCG00000031802
ENSG00000109016
Dehydrogenase/reductase 7B
Low tissue specificity
Detected in all
DHRS7C
ENSSSCG00000017996
ENSG00000184544
Dehydrogenase/reductase 7C
Tissue enhanced
Detected in some
heart:
30.9
skeletal muscle:
56.4
DHRS9
ENSSSCG00000015930
ENSG00000073737
Dehydrogenase/reductase 9
Tissue enhanced
Detected in many
large intestine:
10.0
lymphoid tissue:
13.6
upper respiratory system:
31.8
DHTKD1
ENSSSCG00000039539
ENSG00000181192
Dehydrogenase E1 and transketolase domain containing 1
Tissue enhanced
Detected in all
liver:
53.8
DHX15
ENSSSCG00000008756
ENSG00000109606
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
Low tissue specificity
Detected in all
DHX16
ENSSSCG00000001376
ENSG00000204560
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
Low tissue specificity
Detected in all
DHX29
ENSSSCG00000016907
ENSG00000067248
DExH-box helicase 29
Tissue enhanced
Detected in all
lens:
55.5
DHX30
ENSSSCG00000011342
ENSG00000132153
DExH-box helicase 30
Low tissue specificity
Detected in all
DHX32
ENSSSCG00000010744
ENSG00000089876
DEAH-box helicase 32 (putative)
Low tissue specificity
Detected in all
DHX33
ENSSSCG00000039064
ENSG00000005100
DEAH-box helicase 33
Low tissue specificity
Detected in all
DHX34
ENSSSCG00000003114
ENSG00000134815
DExH-box helicase 34
Low tissue specificity
Detected in all
DHX35
ENSSSCG00000007352
ENSG00000101452
DEAH-box helicase 35
Low tissue specificity
Detected in all
DHX36
ENSSSCG00000024916
ENSG00000174953
DEAH-box helicase 36
Low tissue specificity
Detected in all
DHX37
ENSSSCG00000009758
ENSG00000150990
DEAH-box helicase 37
Low tissue specificity
Detected in all
DHX40
ENSSSCG00000017665
ENSG00000108406
DEAH-box helicase 40
Low tissue specificity
Detected in all
DHX57
ENSSSCG00000008479
ENSG00000163214
DExH-box helicase 57
Low tissue specificity
Detected in all
DHX58
ENSSSCG00000017416
ENSG00000108771
Probable ATP-dependent RNA helicase DHX58
Tissue enhanced
Detected in all
testis:
30.1
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