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UMAP gene cluster
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Keyword
Chromosome
1
2
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6
7
8
9
10
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12
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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14921 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
PAH
ENSSSCG00000000856
ENSG00000171759
Phenylalanine hydroxylase
Tissue enriched
Detected in some
liver:
213.5
PAICS
ENSSSCG00000008901
ENSG00000128050
Phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase
Tissue enhanced
Detected in all
liver:
46.8
PAIP1
ENSSSCG00000016874
ENSG00000172239
Poly(A) binding protein interacting protein 1
Tissue enhanced
Detected in all
lens:
70.1
PAIP2
ENSSSCG00000026606
ENSG00000120727
Poly(A) binding protein interacting protein 2
Low tissue specificity
Detected in all
PAK1
ENSSSCG00000014878
ENSG00000149269
P21 (RAC1) activated kinase 1
Tissue enriched
Detected in all
brain:
75.9
PAK1IP1
ENSSSCG00000001041
ENSG00000111845
PAK1 interacting protein 1
Low tissue specificity
Detected in all
PAK2
ENSSSCG00000011843
ENSG00000180370
P21 (RAC1) activated kinase 2
Low tissue specificity
Detected in all
PAK3
ENSSSCG00000025306
ENSG00000077264
P21 (RAC1) activated kinase 3
Tissue enhanced
Detected in many
brain:
35.9
ductus deferens:
43.4
male glands:
39.4
PAK4
ENSSSCG00000021333
ENSG00000130669
P21 (RAC1) activated kinase 4
Low tissue specificity
Detected in all
PALB2
ENSSSCG00000010794
ENSG00000083093
Partner and localizer of BRCA2
Low tissue specificity
Detected in all
PALD1
ENSSSCG00000036446
ENSG00000107719
Phosphatase domain containing, paladin 1
Low tissue specificity
Detected in all
PALLD
ENSSSCG00000029331
ENSG00000129116
Palladin, cytoskeletal associated protein
Tissue enhanced
Detected in many
heart:
77.4
smooth muscle:
78.3
PALM
ENSSSCG00000039575
ENSG00000099864
Paralemmin-1
Tissue enriched
Detected in all
lens:
205.3
PALM2
ENSSSCG00000033120
ENSG00000157654,ENSG00000241978
A-kinase anchor protein 2
Tissue enriched
Detected in all
lens:
233.6
PALM3
ENSSSCG00000013767
ENSG00000187867
Paralemmin 3
Tissue enhanced
Detected in all
male glands:
27.0
PALMD
ENSSSCG00000006874
ENSG00000099260
Palmdelphin
Low tissue specificity
Detected in many
PAM
ENSSSCG00000014184
ENSG00000145730
Peptidylglycine alpha-amidating monooxygenase
Tissue enhanced
Detected in all
cartilage:
159.1
heart:
115.9
PAMR1
ENSSSCG00000028338
ENSG00000149090
Inactive serine protease PAMR1 precursor
Tissue enhanced
Detected in many
brain:
29.4
PAN2
ENSSSCG00000000393
ENSG00000135473
PAN2 poly(A) specific ribonuclease subunit
Low tissue specificity
Detected in all
PAN3
ENSSSCG00000009319
ENSG00000152520
PAN3 poly(A) specific ribonuclease subunit
Low tissue specificity
Detected in all
PANK1
ENSSSCG00000010456
ENSG00000152782
Pantothenate kinase 1
Tissue enhanced
Detected in all
liver:
40.5
male glands:
36.0
PANK2
ENSSSCG00000007142
ENSG00000125779
Pantothenate kinase 2
Low tissue specificity
Detected in all
PANK3
ENSSSCG00000017014
ENSG00000120137
Pantothenate kinase 3
Low tissue specificity
Detected in all
PANK4
ENSSSCG00000027299
ENSG00000157881
Pantothenate kinase 4
Low tissue specificity
Detected in all
PANX2
ENSSSCG00000000975
ENSG00000073150
Pannexin 2
Tissue enhanced
Detected in many
brain:
28.5
PAOX
ENSSSCG00000040586
ENSG00000148832
Polyamine oxidase
Tissue enhanced
Detected in many
skin:
40.6
PAPD4
ENSSSCG00000014114
ENSG00000164329
Poly(A) RNA polymerase D4, non-canonical
Tissue enhanced
Detected in all
lymphoid tissue:
93.5
PAPD5
ENSSSCG00000040887
ENSG00000121274
Poly(A) RNA polymerase D5, non-canonical
Low tissue specificity
Detected in all
PAPD7
ENSSSCG00000017102
ENSG00000112941
Poly(A) RNA polymerase D7, non-canonical
Low tissue specificity
Detected in all
PAPLN
ENSSSCG00000002341
ENSG00000100767
Papilin, proteoglycan like sulfated glycoprotein
Tissue enriched
Detected in many
kidney:
72.8
PAPOLG
ENSSSCG00000008389
ENSG00000115421
Poly(A) polymerase gamma
Low tissue specificity
Detected in all
PAPSS1
ENSSSCG00000031901
ENSG00000138801
3'-phosphoadenosine 5'-phosphosulfate synthase 1
Tissue enhanced
Detected in all
cartilage:
53.4
PAPSS2
ENSSSCG00000010437
ENSG00000198682
3'-phosphoadenosine 5'-phosphosulfate synthase 2
Tissue enhanced
Detected in all
adrenal gland:
43.8
ovary:
53.6
testis:
77.5
PAQR3
ENSSSCG00000009259
ENSG00000163291
Progestin and adipoQ receptor family member 3
Low tissue specificity
Detected in all
PAQR4
ENSSSCG00000026248
ENSG00000162073
Progestin and adipoQ receptor family member 4
Tissue enhanced
Detected in many
brain:
14.9
retina:
19.5
PAQR7
ENSSSCG00000003551
ENSG00000182749
Membrane progestin receptor alpha
Tissue enhanced
Detected in many
brain:
15.8
testis:
21.3
PAQR9
ENSSSCG00000011685
ENSG00000188582
Progestin and adipoQ receptor family member 9
Tissue enhanced
Detected in some
heart:
10.3
liver:
11.6
ovary:
15.5
retina:
13.4
testis:
25.3
PARD3
ENSSSCG00000011103
ENSG00000148498
Par-3 family cell polarity regulator
Low tissue specificity
Detected in all
PARD3B
ENSSSCG00000016123
ENSG00000116117
Par-3 family cell polarity regulator beta
Low tissue specificity
Detected in all
PARD6B
ENSSSCG00000027206
ENSG00000124171
Partitioning defective 6 homolog beta
Low tissue specificity
Detected in many
PARG
ENSSSCG00000010396
ENSG00000227345
Poly(ADP-ribose) glycohydrolase
Low tissue specificity
Detected in all
PARK7
ENSSSCG00000003385
ENSG00000116288
Protein DJ-1
Tissue enriched
Detected in all
lens:
158.3
PARM1
ENSSSCG00000008966
ENSG00000169116
Prostate androgen-regulated mucin-like protein 1 precursor
Tissue enhanced
Detected in all
pineal gland:
103.9
PARN
ENSSSCG00000007878
ENSG00000140694
Poly(A)-specific ribonuclease
Low tissue specificity
Detected in all
PARP1
ENSSSCG00000023660
ENSG00000143799
Poly(ADP-ribose) polymerase 1
Low tissue specificity
Detected in all
PARP11
ENSSSCG00000000728
ENSG00000111224
Poly(ADP-ribose) polymerase family member 11
Low tissue specificity
Detected in all
PARP12
ENSSSCG00000016502
ENSG00000059378
Poly(ADP-ribose) polymerase family member 12
Low tissue specificity
Detected in many
PARP14
ENSSSCG00000011874
ENSG00000173193
Poly(ADP-ribose) polymerase family member 14
Tissue enhanced
Detected in many
lymphoid tissue:
27.1
small intestine:
35.3
PARP16
ENSSSCG00000004929
ENSG00000138617
Poly(ADP-ribose) polymerase family member 16
Low tissue specificity
Detected in all
PARP2
ENSSSCG00000002143
ENSG00000129484
Poly(ADP-ribose) polymerase 2
Low tissue specificity
Detected in all
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