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UMAP gene cluster
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Keyword
Chromosome
1
2
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7
8
9
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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14921 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
OTUB2
ENSSSCG00000002469
ENSG00000089723
OTU deubiquitinase, ubiquitin aldehyde binding 2
Tissue enriched
Detected in many
testis:
38.9
OTUD1
ENSSSCG00000011076
ENSG00000165312
OTU deubiquitinase 1
Tissue enhanced
Detected in many
aorta:
43.2
heart:
50.2
skeletal muscle:
98.6
OTUD3
ENSSSCG00000039652
ENSG00000169914
OTU deubiquitinase 3
Low tissue specificity
Detected in all
OTUD4
ENSSSCG00000009042
ENSG00000164164
OTU deubiquitinase 4
Low tissue specificity
Detected in all
OTUD5
ENSSSCG00000021934
ENSG00000068308
OTU deubiquitinase 5
Low tissue specificity
Detected in all
OTUD6B
ENSSSCG00000006120
ENSG00000155100
OTU domain containing 6B
Low tissue specificity
Detected in all
OTUD7B
ENSSSCG00000006663
ENSG00000264522
OTU deubiquitinase 7B
Low tissue specificity
Detected in all
OTULIN
ENSSSCG00000034714
ENSG00000154124
OTU deubiquitinase with linear linkage specificity
Low tissue specificity
Detected in all
OVCA2
ENSSSCG00000028078
ENSG00000262664
OVCA2, serine hydrolase domain containing
Low tissue specificity
Detected in all
OXA1L
ENSSSCG00000002042
ENSG00000155463
OXA1L, mitochondrial inner membrane protein
Low tissue specificity
Detected in all
OXCT1
ENSSSCG00000016863
ENSG00000083720
Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
Low tissue specificity
Detected in all
OXLD1
ENSSSCG00000033788
ENSG00000204237
Oxidoreductase like domain containing 1
Tissue enhanced
Detected in all
lens:
52.3
OXNAD1
ENSSSCG00000011197
ENSG00000154814
Oxidoreductase NAD binding domain containing 1
Low tissue specificity
Detected in all
OXR1
ENSSSCG00000006037
ENSG00000164830
Oxidation resistance 1
Tissue enhanced
Detected in all
brain:
55.0
OXSM
ENSSSCG00000011215
ENSG00000151093
3-oxoacyl-ACP synthase, mitochondrial
Low tissue specificity
Detected in all
OXSR1
ENSSSCG00000011253
ENSG00000172939
Serine/threonine-protein kinase OSR1
Tissue enhanced
Detected in all
lens:
63.3
OXTR
ENSSSCG00000021585
ENSG00000180914
Oxytocin receptor
Tissue enhanced
Detected in all
ovary:
28.2
P2RX3
ENSSSCG00000029468
ENSG00000109991
Purinergic receptor P2X 3
Tissue enriched
Detected in some
pineal gland:
41.8
P2RX6
ENSSSCG00000010101
ENSG00000099957
Purinergic receptor P2X 6
Low tissue specificity
Detected in all
P2RX7
ENSSSCG00000009817
ENSG00000089041
Purinergic receptor P2X 7
Low tissue specificity
Detected in all
P2RY11
ENSSSCG00000024072
ENSG00000244165
P2Y purinoceptor 11
Low tissue specificity
Detected in all
P2RY12
ENSSSCG00000011713
ENSG00000169313
P2Y purinoceptor 12
Tissue enhanced
Detected in many
brain:
35.2
pineal gland:
16.4
P2RY13
ENSSSCG00000032162
ENSG00000181631
Purinergic receptor P2Y13
Tissue enhanced
Detected in many
choroid plexus:
13.6
lymphoid tissue:
29.5
P2RY14
ENSSSCG00000011712
ENSG00000174944
Purinergic receptor P2Y14
Tissue enhanced
Detected in all
choroid plexus:
37.0
small intestine:
33.1
P2RY2
ENSSSCG00000040207
ENSG00000175591
P2Y purinoceptor 2
Tissue enhanced
Detected in many
vagus nerve:
52.1
P2RY6
ENSSSCG00000014823
ENSG00000171631
P2Y purinoceptor 6
Tissue enhanced
Detected in many
ovary:
12.5
P2RY8
ENSSSCG00000035911
ENSG00000182162
P2Y receptor family member 8
Tissue enhanced
Detected in many
lymphoid tissue:
43.0
upper respiratory system:
30.2
P3H1
ENSSSCG00000023920
ENSG00000117385
Prolyl 3-hydroxylase 1
Tissue enhanced
Detected in all
cartilage:
122.2
lens:
87.8
P3H2
ENSSSCG00000011813
ENSG00000090530
Prolyl 3-hydroxylase 2
Tissue enhanced
Detected in many
lens:
66.7
P3H3
ENSSSCG00000000681
ENSG00000110811
Prolyl 3-hydroxylase 3
Tissue enhanced
Detected in many
cartilage:
48.2
P4HA1
ENSSSCG00000010292
ENSG00000122884
Prolyl 4-hydroxylase subunit alpha-1 precursor
Tissue enhanced
Detected in all
lens:
52.4
P4HA2
ENSSSCG00000020915
ENSG00000072682
Prolyl 4-hydroxylase subunit alpha 2
Low tissue specificity
Detected in all
P4HB
ENSSSCG00000039148
ENSG00000185624
Prolyl 4-hydroxylase subunit beta
Low tissue specificity
Detected in all
P4HTM
ENSSSCG00000011368
ENSG00000178467
Prolyl 4-hydroxylase, transmembrane
Tissue enhanced
Detected in many
brain:
19.7
kidney:
17.3
PAAF1
ENSSSCG00000014831
ENSG00000175575
Proteasomal ATPase associated factor 1
Low tissue specificity
Detected in all
PABPC1
ENSSSCG00000006063
ENSG00000070756
Poly(A) binding protein cytoplasmic 1
Low tissue specificity
Detected in all
PABPC4
ENSSSCG00000003660
ENSG00000090621
Poly(A) binding protein cytoplasmic 4
Low tissue specificity
Detected in all
PABPC4L
ENSSSCG00000009067
ENSG00000254535
Poly(A) binding protein cytoplasmic 4 like
Low tissue specificity
Detected in many
PABPN1
ENSSSCG00000002023
ENSG00000258643
Polyadenylate-binding protein 2
Low tissue specificity
Detected in all
PACRGL
ENSSSCG00000008750
ENSG00000163138
Parkin coregulated like
Tissue enhanced
Detected in all
testis:
29.2
PACS1
ENSSSCG00000012956
ENSG00000175115
Phosphofurin acidic cluster sorting protein 1
Low tissue specificity
Detected in all
PACS2
ENSSSCG00000037671
ENSG00000179364
Phosphofurin acidic cluster sorting protein 2
Low tissue specificity
Detected in all
PACSIN2
ENSSSCG00000000036
ENSG00000100266
Protein kinase C and casein kinase substrate in neurons 2
Low tissue specificity
Detected in all
PACSIN3
ENSSSCG00000013244
ENSG00000165912
Protein kinase C and casein kinase substrate in neurons 3
Tissue enhanced
Detected in many
lens:
79.7
skeletal muscle:
53.7
PAF1
ENSSSCG00000022442
ENSG00000006712
PAF1 homolog, Paf1/RNA polymerase II complex component
Low tissue specificity
Detected in all
PAFAH1B1
ENSSSCG00000017836
ENSG00000007168
Platelet-activating factor acetylhydrolase IB subunit alpha
Low tissue specificity
Detected in all
PAFAH1B2
ENSSSCG00000024027
ENSG00000168092
Platelet activating factor acetylhydrolase 1b catalytic subunit 2
Tissue enhanced
Detected in all
brain:
44.7
PAFAH1B3
ENSSSCG00000029070
ENSG00000079462
Platelet activating factor acetylhydrolase 1b catalytic subunit 3
Tissue enhanced
Detected in all
brain:
54.1
PAFAH2
ENSSSCG00000038619
ENSG00000158006
Platelet activating factor acetylhydrolase 2
Low tissue specificity
Detected in all
PAG1
ENSSSCG00000040208
ENSG00000076641
Phosphoprotein membrane anchor with glycosphingolipid microdomains 1
Tissue enhanced
Detected in all
lymphoid tissue:
32.7
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